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This is the first in a series of three papers in which we study a two-dimensional lattice gas consisting of two types of particles subject to Kawasaki dynamics at low temperature in a large finite box with an open boundary. Each pair of…

Probability · Mathematics 2015-03-18 F. den Hollander , F. R. Nardi , A. Troiani

We present a simple one-dimensional trapping model prompted by the problem of ion current across biological membranes. The trap is modeled mimicking the ionic channel membrane behaviour. Such voltage-sensitive channels are open or closed…

Statistical Mechanics · Physics 2009-10-31 Alejandro D. Sanchez , Jorge A. Revelli , Horacio S. Wio

We study the large deviations of the time-integrated current for a self-propelled particle moving within a confined environment. The dynamics is modeled as a semi-Markovian process, where the transitions between a \textit{normal running…

Statistical Mechanics · Physics 2026-05-26 Shabnam Sohrabi , Farhad H. Jafarpour

We report an experimental investigation of the caging motion in a uniformly heated granular fluid, for a wide range of filling fractions, $\phi$. At low $\phi$ the classic diffusive behavior of a fluid is observed. However, as $\phi$ is…

Soft Condensed Matter · Physics 2009-11-11 Pedro M. Reis , Rohit A. Ingale , Mark D. Shattuck

Experiments measuring currents through single protein channels show unstable currents. Channels switch between 'open' or 'closed' states in a spontaneous stochastic process called gating. Currents are either (nearly) zero or at a definite…

Analysis of PDEs · Mathematics 2015-06-11 Tai-Chia Lin , Bob Eisenberg

Ion channels are of major interest and form an area of intensive research in the fields of biophysics and medicine since they control many vital physiological functions. The aim of this work is on one hand to propose a fully stochastic and…

Biomolecules · Quantitative Biology 2016-01-11 Daniela Morale , Mattia Zanella , Vincenzo Capasso , Willi Jaeger

Experiments on single ionic channels have contributed to a large extent to our current view on the function of cell membrane. In these experiments the main observables are the physical quantities: ionic concentration, membrane electrostatic…

Biological Physics · Physics 2018-04-17 Laureano Ramírez-Piscina , José M. Sancho

A new paradigm for the unification of physics is described. It is called Cellular Automata (CA) theory, which is the most massively parallel computer model currently known to science. We maintain that at the tiniest distance and time scales…

General Physics · Physics 2007-05-23 Tom Ostoma , Mike Trushyk

This paper considers particle propagation in a cylindrical molecular communication channel, e.g. a simplified model of a blood vessel. Emitted particles are influenced by diffusion, flow, and a vertical force induced e.g. by gravity or…

Computational Physics · Physics 2019-02-26 Maximilian Schäfer , Wayan Wicke , Rudolf Rabenstein , Robert Schober

Layered Cellular Automata (LCA) extends the concept of traditional cellular automata (CA) to model complex systems and phenomena. In LCA, each cell's next state is determined by the interaction of two layers of computation, allowing for…

Cellular Automata and Lattice Gases · Physics 2023-08-15 Abhishek Dalai

Motivated by questions in biology and distributed computing, we investigate the behaviour of particular cellular automata, modelled as one-dimensional arrays of identical finite automata. We investigate what sort of self-stabilising…

Formal Languages and Automata Theory · Computer Science 2009-11-14 Alan Gibbons , Martyn Amos

This is the second in a series of three papers in which we study a two-dimensional lattice gas consisting of two types of particles subject to Kawasaki dynamics at low temperature in a large finite box with an open boundary. Each pair of…

Probability · Mathematics 2015-05-28 Frank den Hollander , Francesca R. Nardi , Alessio Troiani

The piston system (particles in a box) is the simplest and paradigmatic model in traditional thermodynamics. However, the recently established framework of stochastic thermodynamics (ST) fails to apply to this model system due to the…

Statistical Mechanics · Physics 2016-10-28 Zongping Gong , Yueheng Lan , H. T. Quan

Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these…

Statistical Mechanics · Physics 2021-11-17 Akriti Jindal , Anatoly B. Kolomeisky , Arvind Kumar Gupta

A simple relation of the order of $n$ abstract objects generates an $n-2$ dimensional basis of three dimensional vectors. A cellular automaton-like model of evolution of this system is postulated. During this evolution, some quantities…

Cellular Automata and Lattice Gases · Physics 2017-08-14 Marek Pietrow

A recently introduced particle-based model for fluid dynamics with effective excluded volume interactions is analyzed in detail. The interactions are modeled by means of stochastic multiparticle collisions which are biased and depend on…

Soft Condensed Matter · Physics 2007-05-23 Thomas Ihle , Erkan Tuzel

The original local, discrete example of Linear Unitary Cellular Automata (LUCA) is analyzed in terms of a new representation previously introduced in [1] for classical CA. Several important underlying symmetries are reviewed and their tight…

Cellular Automata and Lattice Gases · Physics 2016-08-22 T. E. Raptis

Quantum cellular automata (QCA) constitute space and time homogeneous discrete models for quantum field theories (QFTs). Although QFTs are defined without reference to particles, computations are done in terms of Feynman diagrams, which are…

Quantum Physics · Physics 2016-01-27 David A. Meyer , Asif Shakeel

We study numerically and analytically the properties of the stationary state of a particle moving under the influence of an electric field $\bE$ in a two dimensional periodic Lorentz gas with the energy kept constant by a Gaussian…

Chaotic Dynamics · Physics 2015-06-26 F. Bonetto , D. Daems , J. L. Lebowitz

A stochastic cellular automata (CA) model for pedestrian dynamics is presented. Our goal is to simulate different types of pedestrian movement, from regular to panic. But here we emphasize regular situations which imply that pedestrians…

Mathematical Physics · Physics 2009-09-30 Ekaterina Kirik , Tat'yana Yurgel'yan , Dmitriy Krouglov