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Molecular dynamics facilitates the simulation of a complex system to be analyzed at molecular and atomic levels. Simulations can last a long period of time, even months. Due to this cause the graphics processing units (GPUs) and multi-core…

Computational Physics · Physics 2021-02-02 Iuliana Marin , Nicolae Goga , Maria Goga

We carry out a comparative performance study of multi-core CPUs, GPUs and Intel Xeon Phi (Many Integrated Core - MIC) with a microscopy image analysis application. We experimentally evaluate the performance of computing devices on core…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-05-15 George Teodoro , Tahsin Kurc , Guilherme Andrade , Jun Kong , Renato Ferreira , Joel Saltz

The growing demand for computational power is driven by advancements in deep learning, the increasing need for big data processing, and the requirements of scientific simulations for academic and research purposes. Developing countries like…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-16 Aatiz Ghimire , Shahnawaz Alam , Siman Giri , Madhav Prasad Ghimire

Multi-tenant machine learning services have become emerging data-intensive workloads in data centers with heavy usage of GPU resources. Due to the large scale, many tuning parameters and heavy resource usage, it is usually impractical to…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-11 Ruofan Liang , Bingsheng He , Shengen Yan , Peng Sun

With the advent of high-performance computing techniques, the data for analysis has grown significantly. Here, graphic processing unit (GPU) based program kernels are discussed to exploit parallelism in the analysis codes specific to…

Computational Physics · Physics 2018-11-07 Gourav Shrivastav , Manish Agarwal

In the fusion community, the use of high performance computing (HPC) has been mostly dominated by heavy-duty plasma simulations, such as those based on particle-in-cell and gyrokinetic codes. However, there has been a growing interest in…

Computational Physics · Physics 2021-06-14 Diogo R. Ferreira

Graphics Processing Units (GPUs) are now powerful and flexible systems adapted and used for other purposes than graphics calculations (General Purpose computation on GPU -- GPGPU). We present here a prototype to be integrated into…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-06-13 Sylvain Collange , Marc Daumas , David Defour

This paper presents two conceptually simple methods for parallelizing a Parallel Tempering Monte Carlo simulation in a distributed volunteer computing context, where computers belonging to the general public are used. The first method uses…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-03-31 Kamran Karimi , Neil G. Dickson , Firas Hamze

Computational Fluid Dynamics (CFD) is the simulation of fluid flow undertaken with the use of computational hardware. The underlying equations are computationally challenging to solve and necessitate high performance computing (HPC) to…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-04 Zachary Cooper-Baldock , Brenda Vara Almirall , Kiao Inthavong

The vast amount of processing power and memory bandwidth provided by modern Graphics Processing Units (GPUs) make them a platform for data-intensive applications. The database community identified GPUs as effective co-processors for data…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-02 Bernd Amann , Youry Khmelevsky , Gaetan Hains

GPUs offer massive compute parallelism and high-bandwidth memory accesses. GPU database systems seek to exploit those capabilities to accelerate data analytics. Although modern GPUs have more resources (e.g., higher DRAM bandwidth) than…

Databases · Computer Science 2023-02-03 Jiashen Cao , Rathijit Sen , Matteo Interlandi , Joy Arulraj , Hyesoon Kim

Graphics processing units (GPUs) are recently being used to an increasing degree for general computational purposes. This development is motivated by their theoretical peak performance, which significantly exceeds that of broadly available…

Computational Physics · Physics 2015-03-17 Martin Weigel

Modern graphics processing units (GPUs) provide impressive computing resources, which can be accessed conveniently through the CUDA programming interface. We describe how GPUs can be used to considerably speed up molecular dynamics (MD)…

Computational Physics · Physics 2011-04-08 Peter H. Colberg , Felix Höfling

In this work, we examine the performance, energy efficiency and usability when using Python for developing HPC codes running on the GPU. We investigate the portability of performance and energy efficiency between CUDA and OpenCL; between…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-11 Håvard H. Holm , André R. Brodtkorb , Martin L. Sætra

The Graphics Processing Unit (GPU) is a powerful tool for parallel computing. In the past years the performance and capabilities of GPUs have increased, and the Compute Unified Device Architecture (CUDA) - a parallel computing architecture…

Computational Physics · Physics 2009-12-17 Ferenc Molnar , Tamas Szakaly , Robert Meszaros , Istvan Lagzi

Deep Learning (DL) models have achieved superior performance. Meanwhile, computing hardware like NVIDIA GPUs also demonstrated strong computing scaling trends with 2x throughput and memory bandwidth for each generation. With such strong…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-05-26 Fuxun Yu , Di Wang , Longfei Shangguan , Minjia Zhang , Chenchen Liu , Xiang Chen

We consider differential Lyapunov and Riccati equations, and generalized versions thereof. Such equations arise in many different areas and are especially important within the field of optimal control. In order to approximate their…

Numerical Analysis · Mathematics 2018-10-23 Hermann Mena , Lena-Maria Pfurtscheller , Tony Stillfjord

Many artificial intelligence (AI) devices have been developed to accelerate the training and inference of neural networks models. The most common ones are the Graphics Processing Unit (GPU) and Tensor Processing Unit (TPU). They are highly…

Machine Learning · Computer Science 2022-10-25 xiangyang Ju , Yunsong Wang , Daniel Murnane , Nicholas Choma , Steven Farrell , Paolo Calafiura

Scientists are increasingly exploring and utilizing the massive parallelism of general-purpose accelerators such as GPUs for scientific breakthroughs. As a result, datacenters, hyperscalers, national computing centers, and supercomputers…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-10 Prasoon Sinha , Akhil Guliani , Rutwik Jain , Brandon Tran , Matthew D. Sinclair , Shivaram Venkataraman

Over the last couple of years it has been realized that the vast computational power of graphics processing units (GPUs) could be harvested for purposes other than the video game industry. This power, which at least nominally exceeds that…

Statistical Mechanics · Physics 2011-07-26 Martin Weigel