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This article describes algorithms for the hybrid parallelization and SIMD vectorization of molecular dynamics simulations with short-range forces. The parallelization method combines domain decomposition with a thread-based parallelization…

Materials Science · Physics 2017-09-13 Chris M. Mangiardi , Ralf Meyer

Large-scale parallel numerical simulations are essential for a wide range of engineering problems that involve complex, coupled physical processes interacting across a broad range of spatial and temporal scales. The data structures involved…

Mathematical Software · Computer Science 2018-10-11 Fande Kong , Roy H. Stogner , Derek R. Gaston , John W. Peterson , Cody J. Permann , Andrew E. Slaughter , Richard C. Martineau

Many complex problems, such as natural language processing or visual object detection, are solved using deep learning. However, efficient training of complex deep convolutional neural networks for large data sets is computationally…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-06 Andre Viebke , Sabri Pllana , Suejb Memeti , Joanna Kolodziej

Convolutional neural networks (CNNs) are becoming very successful and popular for a variety of applications. The Loki many-core processor architecture is very promising for achieving specialised hardware performance and efficiency while…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-06-05 Philippos Papaphilippou

The complexity of multimedia applications in terms of intensity of computation and heterogeneity of treated data led the designers to embark them on multiprocessor systems on chip. The complexity of these systems on one hand and the…

Performance · Computer Science 2010-02-08 Dorsaf Sebai , Abderrazak Jemai , Imed Bennour

We present a shared memory implementation of a parallel algorithm, called delta-stepping, for solving the single source shortest path problem for directed and undirected graphs. In order to reduce synchronization costs we make some…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-02-21 M. Kranjčević , D. Palossi , S. Pintarelli

Programming efficiently heterogeneous systems is a major challenge, due to the complexity of their architectures. Intel oneAPI, a new and powerful standards-based unified programming model, built on top of SYCL, addresses these issues. In…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-16 Raúl Nozal , Jose Luis Bosque

We present a light and fast, public available, ray-tracer {\tt Splotch} software tool which supports the effective visualization of cosmological simulations data. We describe the algorithm it relies on, which is designed in order to deal…

Astrophysics · Physics 2008-12-18 K. Dolag , M. Reinecke , C. Gheller , S. Imboden

Production-quality parallel applications are often a mixture of diverse operations, such as computation- and communication-intensive, regular and irregular, tightly coupled and loosely linked operations. In conventional construction of…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-08-07 Ivy Bo Peng , Roberto Gioiosa , Gokcen Kestor , Erwin Laure , Stefano Markidis

Not only with the large host memory for supporting large scale graph processing, GPU-accelerated heterogeneous architecture can also provide a great potential for high-performance computing. However, few existing heterogeneous systems can…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-06-05 Xianliang Li

The gap between the cost of moving data and the cost of computing continues to grow, making it ever harder to design iterative solvers on extreme-scale architectures. This problem can be alleviated by alternative algorithms that reduce the…

We present an efficient distributed memory parallel algorithm for computing connected components in undirected graphs based on Shiloach-Vishkin's PRAM approach. We discuss multiple optimization techniques that reduce communication volume as…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-02-15 Chirag Jain , Patrick Flick , Tony Pan , Oded Green , Srinivas Aluru

Modern microarchitectures are some of the world's most complex man-made systems. As a consequence, it is increasingly difficult to predict, explain, let alone optimize the performance of software running on such microarchitectures. As a…

Performance · Computer Science 2019-03-06 Andreas Abel , Jan Reineke

Understanding the scalability of parallel programs is crucial for software optimization and hardware architecture design. As HPC hardware is moving towards many-core design, it becomes increasingly difficult for a parallel program to make…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-11-21 Donglin Chen , Jianbin Fang , Chuanfu Xu , Shizhao Chen , Zheng Wang

Limits on power dissipation have pushed CPUs to grow in parallel processing capabilities rather than clock rate, leading to the rise of "manycore" or GPU-like processors. In order to achieve the best performance, applications must be able…

High-performance computing systems are more and more often based on accelerators. Computing applications targeting those systems often follow a host-driven approach in which hosts offload almost all compute-intensive sections of the code…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-05-15 E. Calore , A. Gabbana , S. F. Schifano , R. Tripiccione

Modern computer systems typically conbine multicore CPUs with accelerators like GPUs for inproved performance and energy efficiency. However, these sys- tems suffer from poor performance portability, code tuned for one device must be…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-05-23 Thomas L. Falch , Anne C. Elster

Any architecture for practical quantum computing must be scalable. An attractive approach is to create multiple cores, computing regions of fixed size that are well-spaced but interlinked with communication channels. This exploded…

Quantum Physics · Physics 2022-11-08 Hamza Jnane , Brennan Undseth , Zhenyu Cai , Simon C Benjamin , Bálint Koczor

High Performance Computing (HPC) platforms allow scientists to model computationally intensive algorithms. HPC clusters increasingly use General-Purpose Graphics Processing Units (GPGPUs) as accelerators; FPGAs provide an attractive…

Hardware Architecture · Computer Science 2015-04-20 Syed Waqar Nabi , Saji N. Hameed , Wim Vanderbauwhede

Over the past few years, there has been an increased interest in including FPGAs in data centers and high-performance computing clusters along with GPUs and other accelerators. As a result, it has become increasingly important to have a…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-14 Mostafa Eghbali Zarch , Reece Neff , Michela Becchi
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