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Drug repositioning offers an effective solution to drug discovery, saving both time and resources by finding new indications for existing drugs. Typically, a drug takes effect via its protein targets in the cell. As a result, it is…

Quantitative Methods · Quantitative Biology 2018-11-26 Maryam Lotfi Shahreza , Nasser Ghadiri , Seyed Rasul Mossavi , Jaleh Varshosaz , James Green

We introduce an ensemble learning scheme for community detection in complex networks. The scheme uses a Machine Learning algorithmic paradigm we call Extremal Ensemble Learning. It uses iterative extremal updating of an ensemble of network…

Physics and Society · Physics 2019-10-04 Jiahao Guo , Pramesh Singh , Kevin E. Bassler

In this paper, we propose a novel parallel hierarchical Leiden-based algorithm for dynamic community detection. The algorithm, for a given batch update of edge insertions and deletions, partitions the network into communities using only a…

Social and Information Networks · Computer Science 2025-02-27 Grigoriy Bokov , Aleksandr Konovalov , Anna Uporova , Stanislav Moiseev , Ivan Safonov , Alexander Radionov

Graph anomaly detection faces significant challenges due to the scarcity of reliable anomaly-labeled datasets, driving the development of unsupervised methods. Graph autoencoders (GAEs) have emerged as a dominant approach by reconstructing…

Machine Learning · Computer Science 2025-06-03 Chunyu Wei , Wenji Hu , Xingjia Hao , Yunhai Wang , Yueguo Chen , Bing Bai , Fei Wang

Accurate quantification of both aleatoric and epistemic uncertainties is essential when deploying Graph Neural Networks (GNNs) in high-stakes applications such as drug discovery and financial fraud detection, where reliable predictions are…

Machine Learning · Computer Science 2025-03-12 Linlin Yu , Kangshuo Li , Pritom Kumar Saha , Yifei Lou , Feng Chen

Community detection is an important information mining task to uncover modular structures in large networks. For increasingly common large network data sets, global community detection is prohibitively expensive, and attention has shifted…

Social and Information Networks · Computer Science 2019-05-17 Kun He , Pan Shi , David Bindel , John E. Hopcroft

Community detection in graphs has many important and fundamental applications including in distributed systems, compression, image segmentation, divide-and-conquer graph algorithms such as nested dissection, document and word clustering,…

Social and Information Networks · Computer Science 2019-06-18 Ryan A. Rossi , Nesreen K. Ahmed , Eunyee Koh , Sungchul Kim

Real-world networks have a complex topology comprising many elements often structured into communities. Revealing these communities helps researchers uncover the organizational and functional structure of the system that the network…

Motivated by social network analysis and network-based recommendation systems, we study a semi-supervised community detection problem in which the objective is to estimate the community label of a new node using the network topology and…

Social and Information Networks · Computer Science 2023-06-05 Yicong Jiang , Tracy Ke

Community detection is, at its core, an attempt to attach an interpretable function to an otherwise indecipherable form. The importance of labeling communities has obvious implications for identifying clusters in social networks, but it has…

Social and Information Networks · Computer Science 2018-11-30 Jonathan Eskreis-Winkler , Risi Kondor

Many complex networks display a mesoscopic structure with groups of nodes sharing many links with the other nodes in their group and comparatively few with nodes of different groups. This feature is known as community structure and encodes…

Physics and Society · Physics 2009-07-31 Andrea Lancichinetti , Santo Fortunato

Community detection remains an important problem in data mining, owing to the lack of scalable algorithms that exploit all aspects of available data - namely the directionality of flow of information and the dynamics thereof. Most existing…

Social and Information Networks · Computer Science 2018-05-15 Rajagopal Venkatesaramani , Yevgeniy Vorobeychik

How to identify influential nodes in social networks is of theoretical significance, which relates to how to prevent epidemic spreading or cascading failure, how to accelerate information diffusion, and so on. In this Letter, we make an…

Physics and Society · Physics 2015-06-23 Xiang-Yu Zhao , Bin Huang , Ming Tang , Hai-Feng Zhang , Duan-Bing Chen

We propose a new algorithm to detect the community structure in a network that utilizes both the network structure and vertex attribute data. Suppose we have the network structure together with the vertex attribute data, that is, the…

Social and Information Networks · Computer Science 2016-11-23 Shun Kataoka , Takuto Kobayashi , Muneki Yasuda , Kazuyuki Tanaka

This paper proposes a novel community detection method that integrates the Louvain algorithm with Graph Neural Networks (GNNs), enabling the discovery of communities without prior knowledge. Compared to most existing solutions, the proposed…

Social and Information Networks · Computer Science 2025-09-30 Dalila Khettaf , Djamel Djenouri , Zeinab Rezaeifar , Youcef Djenouri

Link prediction in a graph is the problem of detecting the missing links that would be formed in the near future. Using a graph representation of the data, we can convert the problem of classification to the problem of link prediction which…

Machine Learning · Computer Science 2018-10-02 Seyed Amin Fadaee , Maryam Amir Haeri

Community detection is a fundamental problem in network analysis which is made more challenging by overlaps between communities which often occur in practice. Here we propose a general, flexible, and interpretable generative model for…

Machine Learning · Statistics 2015-03-16 Yuan Zhang , Elizaveta Levina , Ji Zhu

Learning community structures in graphs has broad applications across scientific domains. While graph neural networks (GNNs) have been successful in encoding graph structures, existing GNN-based methods for community detection are limited…

Machine Learning · Statistics 2024-08-05 Yueqi Wang , Yoonho Lee , Pallab Basu , Juho Lee , Yee Whye Teh , Liam Paninski , Ari Pakman

Given a graph where every node has certain attributes associated with it and some nodes have labels associated with them, Collective Classification (CC) is the task of assigning labels to every unlabeled node using information from the node…

Machine Learning · Computer Science 2018-11-14 Priyesh Vijayan , Yash Chandak , Mitesh M. Khapra , Srinivasan Parthasarathy , Balaraman Ravindran

Graph based semi-supervised learning (GSSL) has intuitive representation and can be improved by exploiting the matrix calculation. However, it has to perform iterative optimization to achieve a preset objective, which usually leads to low…

Machine Learning · Computer Science 2019-02-13 Ji Xu , Guoyin Wang