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From understanding the sand on the beach to the foam on your beer, soft sphere simulations have been crucial to the study of the amorphous world around us. However, many of the materials we interact with on a daily basis aren't comprised of…

Soft Condensed Matter · Physics 2024-03-18 R. C. Dennis

We study how the three-dimensional shape of rigid filaments determines the microscopic dynamics and macroscopic rheology of entangled semi-dilute Brownian suspensions. To control the filament shape we use bacterial flagella, which are…

We analyze static properties of a strongly confined semiflexible polymer, i.e. either trapped in a closed space or compressed by external forces, in an athermal solvent. Like a flexible polymer case, we can resort to an analogy with the…

Soft Condensed Matter · Physics 2009-11-13 Takahiro Sakaue

The shape of the building blocks plays a crucial role in directing self-assembly towards desired architectures. Out of the many different shapes, helix has a unique position. Helical structures are ubiquitous in nature and a helical shape…

Soft Condensed Matter · Physics 2016-04-27 Hima Bindu Kolli , Giorgio Cinacchi , Alberta Ferrarini , Achille Giacometti

We systematically explore the self-assembly of semi-flexible polymers in deformable spherical confinement across a wide regime of chain stiffness, contour lengths and packing fractions by means of coarse-grained molecular dynamics…

Soft Condensed Matter · Physics 2021-07-12 Maxime M. C. Tortora , Daniel Jost

The linear natural and forced oscillations of a hemispherical bubble on a solid substrate are under theoretical consideration. The contact line dynamics is taken into account with the Hocking condition, which eventually leads to interaction…

Fluid Dynamics · Physics 2008-05-20 Sergey Shklyaev , Arthur V. Straube

We present a multi-scale model to study the attachment of spherical particles with a rigid core, coated with binding ligands and in equilibrium with the surrounding, quiescent fluid medium. This class of fluid-immersed adhesion is…

Biological Physics · Physics 2013-09-10 Sarthok Sircar , John G. Younger , David M. Bortz

Intermediate filaments are the least explored among the large cytoskeletal elements. We show here that they display conformational anomalies in narrow microfluidic channels. Their unusual behavior can be understood as the consequence of a…

We investigate the sedimentation of chiral particles in viscous fluid flow. We identify helical ribbons as simple particles with strong translation-rotation coupling whose symmetry ensures that the centers of mass, buoyancy, resistance, and…

We investigate experimentally and numerically the defect configurations emerging when a cholesteric liquid crystal is confined to a spherical shell. We uncover a rich scenario of defect configurations, some of them non-existent in nematic…

Soft Condensed Matter · Physics 2017-09-13 Alexandre Darmon , Michael Benzaquen , Simon Čopar , Olivier Dauchot , Teresa Lopez-Leon

The equations for strands of rigid charge configurations interacting nonlocally are formulated on the special Euclidean group, SE(3), which naturally generates helical conformations. Helical stationary shapes are found by minimizing the…

Mathematical Physics · Physics 2011-01-06 Steve Benoit , Darryl D. Holm , Vakhtang Putkaradze

Deformations that conserve the parallelism and the distances --between layers, in smectic phases; between columns, in columnar phases-- are commonplace in liquid crystals. The resulting deformed textures have the same mass density as in the…

Soft Condensed Matter · Physics 2015-06-24 M. -F. Achard , M. Kleman , Yu. A. Nastishin , H. -T. Nguyen

We use a series of molecular dynamics simulations, and analytical theory, to demonstrate that a system of hard spheres confined to a narrow cylindrical channel exhibits a continuous phase transition from an isotropic fluid at low densities,…

Soft Condensed Matter · Physics 2014-09-18 Mahdi Zaeifi Yamchi , Richard K. Bowles

We use numerical simulations to show how noninteracting hard particles binding to a deformable elastic shell may self-assemble into a variety of linear patterns. This is a result of the nontrivial elastic response to deformations of shells.…

Soft Condensed Matter · Physics 2011-02-25 Andela Šarić , Angelo Cacciuto

We theoretically study the elastic deformation of a fluid membrane induced by an adhering spherical colloidal particle within the framework of a Helfrich energy. Based on a full optimization of the membrane shape we find a continuous…

Soft Condensed Matter · Physics 2009-11-07 Markus Deserno , Thomas Bickel

The properties of semiflexible polymers tethered by one end to an impenetrable wall and exposed to oscillatory shear flow are investigated by mesoscale simulations. A polymer, confined in two dimensions, is described by a linear bead-spring…

Soft Condensed Matter · Physics 2021-12-14 Antonio Lamura , Roland G. Winkler , Gerhard Gompper

The Slinky is a well-known example of a highly flexible helical spring, exhibiting large, geometrically nonlinear deformations from minimal applied forces. By considering it as a system of coils that act to resist axial, shearing, and…

Soft Condensed Matter · Physics 2015-06-19 Douglas P. Holmes , Andy D. Borum , Billy F. Moore , Raymond H. Plaut , David A. Dillard

We study slender, helical elastic rods subject to distributed forces and moments. Focussing on the case when the helix axis remains straight, we employ the method of multiple scales to systematically derive an 'equivalent-rod' theory from…

Soft Condensed Matter · Physics 2024-11-14 Michael Gomez , Eric Lauga

We study the periodic buckling patterns that emerge when elastic shells are subjected to geometric confinement. Residual swelling provides access to range of shapes (saddles, rolled sheets, cylinders, and spherical sections) which vary in…

Soft Condensed Matter · Physics 2018-10-12 Lucia Stein-Montalvo , Paul Costa , Matteo Pezzulla , Douglas P. Holmes

Normal contact behaviour between non adhesive fractal rough particles is studied using a finite element method (FEM). A series of spherical grain surfaces with distinguished roughness features are generated by means of Spherical Harmonics.…

Materials Science · Physics 2022-07-14 Deheng Wei , Chongpu Zhai , Dorian A. H. Hanaor , Yixiang Gan