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In this work we study the interleaving distance between merge trees from a combinatorial point of view. We use a particular type of matching between trees to obtain a novel formulation of the distance. With such formulation, we tackle the…

Combinatorics · Mathematics 2024-11-11 Matteo Pegoraro

We analytically study proximity and distance properties of various kernels and similarity measures on graphs. This helps to understand the mathematical nature of such measures and can potentially be useful for recommending the adoption of…

Combinatorics · Mathematics 2018-08-17 Konstantin Avrachenkov , Pavel Chebotarev , Dmytro Rubanov

Measuring the similarity of short written contexts is a fundamental problem in Natural Language Processing. This article provides a unifying framework by which short context problems can be categorized both by their intended application and…

Computation and Language · Computer Science 2010-10-19 Ted Pedersen

We present a new algorithm, which solves the problem of distributively finding a minimum diameter spanning tree of any (non-negatively) real-weighted graph $G = (V,E,\omega)$. As an intermediate step, we use a new, fast, linear-time…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-12-12 Marc Bui , Franck Butelle , Christian Lavault

Based on solid theoretical foundations, we present strong evidences that a number of real-life networks, taken from different domains like Internet measurements, biological data, web graphs, social and collaboration networks, exhibit…

Social and Information Networks · Computer Science 2014-02-24 Muad Abu-Ata , Feodor F. Dragan

The interleaving distance is a key tool for comparing merge trees, which provide topological summaries of scalar functions. In this work, we define an average merge tree for a pair of merge trees using the interleaving distance. Since such…

Computational Geometry · Computer Science 2026-03-03 Elena Farahbakhsh Touli , Ingrid Hotz , Talha Bin Masood

The relationship between two important problems in tree pattern matching, the largest common subtree and the smallest common supertree problems, is established by means of simple constructions, which allow one to obtain a largest common…

Data Structures and Algorithms · Computer Science 2007-05-23 Francesc Rossello , Gabriel Valiente

We consider the problem of finding the smallest graph that contains two input trees each with at most $n$ vertices preserving their distances. In other words, we look for an isometric-universal graph with the minimum number of vertices for…

Data Structures and Algorithms · Computer Science 2025-06-17 Edgar Baucher , François Dross , Cyril Gavoille

Phylogenetic networks which are, as opposed to trees, suitable to describe processes like hybridization and horizontal gene transfer, play a substantial role in evolutionary research. However, while non-treelike events need to be taken into…

Populations and Evolution · Quantitative Biology 2022-07-06 Mareike Fischer , Tom Niklas Hamann , Kristina Wicke

Betweenness centrality is a measure of the importance of a vertex x inside a network based on the fraction of shortest paths passing through x. We study a blow-up construction that has been shown to produce graphs with uniform distribution…

Combinatorics · Mathematics 2021-05-17 David Hartman , Aneta Pokorná

The emergence of massive graph data sets requires fast mining algorithms. Centrality measures to identify important vertices belong to the most popular analysis methods in graph mining. A measure that is gaining attention is forest…

Data Structures and Algorithms · Computer Science 2021-01-18 Alexander van der Grinten , Eugenio Angriman , Maria Predari , Henning Meyerhenke

We present improved learning-augmented algorithms for finding an approximate minimum spanning tree (MST) for points in an arbitrary metric space. Our work follows a recent framework called metric forest completion (MFC), where the learned…

Data Structures and Algorithms · Computer Science 2026-03-02 Nate Veldt , Thomas Stanley , Benjamin W. Priest , Trevor Steil , Keita Iwabuchi , T. S. Jayram , Grace J. Li , Geoffrey Sanders

We significantly improve known time bounds for solving the minimum cut problem on undirected graphs. We use a ``semi-duality'' between minimum cuts and maximum spanning tree packings combined with our previously developed random sampling…

Data Structures and Algorithms · Computer Science 2007-05-23 David R. Karger

Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…

Discrete Mathematics · Computer Science 2013-08-02 Sudheer Vakati , David Fernández-Baca

We introduce a graph polynomial that distinguishes tree structures to represent dependency grammar and a measure based on the polynomial representation to quantify syntax similarity. The polynomial encodes accurate and comprehensive…

Computation and Language · Computer Science 2022-11-15 Pengyu Liu , Tinghao Feng , Rui Liu

Calculating and categorizing the similarity of curves is a fundamental problem which has generated much recent interest. However, to date there are no implementations of these algorithms for curves on surfaces with provable guarantees on…

Computational Geometry · Computer Science 2014-10-10 Erin Wolf Chambers , Mikael Vejdemo-Johansson

The semi-streaming model is a variant of the streaming model frequently used for the computation of graph problems. It allows the edges of an $n$-node input graph to be read sequentially in $p$ passes using $\tilde{O}(n)$ space. In this…

Data Structures and Algorithms · Computer Science 2020-01-22 Yi-Jun Chang , Martin Farach-Colton , Tsan-Sheng Hsu , Meng-Tsung Tsai

Discovering episodes, frequent sets of events from a sequence has been an active field in pattern mining. Traditionally, a level-wise approach is used to discover all frequent episodes. While this technique is computationally feasible it…

Data Structures and Algorithms · Computer Science 2019-02-08 Nikolaj Tatti

Every encoding has priori information if the encoding represents any semantic information of the unverse or object. Encoding means mapping from the unverse to the string or strings of digits. The semantic here is used in the model-theoretic…

Artificial Intelligence · Computer Science 2009-03-24 Xiuli Wang

Humans show high-level of abstraction capabilities in games that require quickly communicating object information. They decompose the message content into multiple parts and communicate them in an interpretable protocol. Toward equipping…

Computer Vision and Pattern Recognition · Computer Science 2022-07-28 Stephan Alaniz , Massimiliano Mancini , Anjan Dutta , Diego Marcos , Zeynep Akata