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Multivariate time series analysis is extensively used in neurophysiology with the aim of studying the relationship between simultaneously recorded signals. Recently, advances on information theory and nonlinear dynamical systems theory have…

Chaotic Dynamics · Physics 2007-05-23 Ernesto Pereda , Rodrigo Quian Quiroga , Joydeep Bhattacharya

All neuroimaging modalities have their own strengths and limitations. A current trend is toward interdisciplinary approaches that use multiple imaging methods to overcome limitations of each method in isolation. At the same time…

Methodology · Statistics 2023-03-30 Pratim Guha Niyogi , Martin A. Lindquist , Tapabrata Maiti

Machine learning techniques have enabled researchers to leverage neuroimaging data to decode speech from brain activity, with some amazing recent successes achieved by applications built using invasive devices. However, research requiring…

Machine Learning · Computer Science 2024-10-29 Jeremiah Ridge , Oiwi Parker Jones

Generative AI has recently propelled the decoding of images from brain activity. How do these approaches scale with the amount and type of neural recordings? Here, we systematically compare image decoding from four types of non-invasive…

Image and Video Processing · Electrical Eng. & Systems 2025-01-29 Hubert Banville , Yohann Benchetrit , Stéphane d'Ascoli , Jérémy Rapin , Jean-Rémi King

Many studies collect functional data from multiple subjects that have both multilevel and multivariate structures. An example of such data comes from popular neuroscience experiments where participants' brain activity is recorded using…

Methodology · Statistics 2019-09-19 Jun Zhang , Greg J Siegle , Wendy D'Andrea , Robert T Krafty

Functional MRI (fMRI) has become the most common method for investigating the human brain. However, fMRI data present some complications for statistical analysis and modeling. One recently developed approach to these data focuses on…

Applications · Statistics 2015-03-19 Vincent Q. Vu , Pradeep Ravikumar , Thomas Naselaris , Kendrick N. Kay , Jack L. Gallant , Bin Yu

Now over 20 years old, functional MRI (fMRI) has a large and growing literature that is best synthesised with meta-analytic tools. As most authors do not share image data, only the peak activation coordinates (foci) reported in the paper…

Psychological research often focuses on examining group differences in a set of numeric variables for which normality is doubtful. Longitudinal studies enable the investigation of developmental trends. For instance, a recent study…

Applications · Statistics 2023-10-05 Ricarda Graf , Marina Zeldovich , Sarah Friedrich

Brain decoding that classifies cognitive states using the functional fluctuations of the brain can provide insightful information for understanding the brain mechanisms of cognitive functions. Among the common procedures of decoding the…

Human-Computer Interaction · Computer Science 2024-07-12 Jianfei Zhu , Baichun Wei , Jiaru Tian , Feng Jiang , Chunzhi Yi

Motor imagery (MI) is a well-documented technique used by subjects in BCI (Brain Computer Interface) experiments to modulate brain activity within the motor cortex and surrounding areas of the brain. In our term project, we conducted an…

Human-Computer Interaction · Computer Science 2023-06-14 Giovanni Jana , Corey Karnei , Shuvam Keshari

This paper introduces variational representational similarity analysis RSA (vRSA) for electromagnetic recordings of neural responses (e.g., EEG, MEG, ECoG or LFP). Variational RSA is a Bayesian approach for testing whether the similarity of…

Neurons and Cognition · Quantitative Biology 2025-11-04 Alex Lepauvre , Lucia Melloni , Karl Friston , Peter Zeidman

Many properties of perceptual decision making are well-modeled by deep neural networks. However, such architectures typically treat decisions as instantaneous readouts, overlooking the temporal dynamics of the decision process. We present…

Neurons and Cognition · Quantitative Biology 2025-11-25 Hayden R. Johnson , Anastasia N. Krouglova , Hadi Vafaii , Jacob L. Yates , Pedro J. Gonçalves

There is a broad need in the neuroscience community to understand and visualize large-scale recordings of neural activity, big data acquired by tens or hundreds of electrodes simultaneously recording dynamic brain activity over minutes to…

Neurons and Cognition · Quantitative Biology 2015-11-24 Bingni W. Brunton , Lise A. Johnson , Jeffrey G. Ojemann , J. Nathan Kutz

The integration of deep learning and neuroscience has been advancing rapidly, which has led to improvements in the analysis of brain activity and the understanding of deep learning models from a neuroscientific perspective. The…

Neurons and Cognition · Quantitative Biology 2023-06-21 Yu Takagi , Shinji Nishimoto

Understanding the sequence of cognitive operations that underlie decision-making is a fundamental challenge in cognitive neuroscience. Traditional approaches often rely on group-level statistics, which obscure trial-by-trial variations in…

Neurons and Cognition · Quantitative Biology 2025-04-15 Rick den Otter , Gabriel Weindel , Sjoerd Stuit , Leendert van Maanen

Decoding imagined speech from non-invasive brain recordings is challenging because imagined datasets are scarce and difficult to align temporally across subjects and sessions In this work, we propose a new approach to the decoding of…

Machine Learning · Computer Science 2026-05-11 Maryam Maghsoudi , Shihab Shamma

Motor imagery (MI) based EEG represents a frontier in enabling direct neural control of external devices and advancing neural rehabilitation. This study introduces a novel time embedding technique, termed traveling-wave based time…

Neurons and Cognition · Quantitative Biology 2024-08-26 Zhengqing Miao , Meirong Zhao

Decoding visual stimuli from neural population activity is crucial for understanding the brain and for applications in brain-machine interfaces. However, such biological data is often scarce, particularly in primates or humans, where…

Machine Learning · Computer Science 2025-10-24 Jan Sobotka , Luca Baroni , Ján Antolík

Every day, the human brain processes an immense volume of visual information, relying on intricate neural mechanisms to perceive and interpret these stimuli. Recent breakthroughs in functional magnetic resonance imaging (fMRI) have enabled…

Computer Vision and Pattern Recognition · Computer Science 2023-05-22 Matteo Ferrante , Furkan Ozcelik , Tommaso Boccato , Rufin VanRullen , Nicola Toschi

Non-invasive brainwave decoding is usually done using Magneto/Electroencephalography (MEG/EEG) sensor measurements as inputs. This makes combining datasets and building models with inductive biases difficult as most datasets use different…

Signal Processing · Electrical Eng. & Systems 2024-10-29 Yonatan Gideoni , Ryan Charles Timms , Oiwi Parker Jones