Related papers: A High Quartets Distance Construction

We present approximation algorithms for the following NP-hard optimization problems related to bottleneck spanning trees in metric spaces. 1. The disjoint bottleneck spanning tree problem: Given $n$ pairs of points in a metric space, find…

To each link $L$ in $S^3$ we associate a collection of certain labelled directed trees, called width trees. We interpret some classical and new topological link invariants in terms of these width trees and show how the geometric structure…

We obtain assumption-free, non-asymptotic, uniform bounds on the product of the height and the width of uniformly random trees with a given degree sequence, conditioned Bienaym\'e trees and simply generated trees. We show that for a tree of…

In this note, we obtain an upper bound on the maximum number of distinct non-empty palindromes in starlike trees. This bound implies, in particular, that there are at most $4n$ distinct non-empty palindromes in a starlike tree with three…

We investigate the effective resistance $R_n$ and conductance $C_n$ between the root and leaves of a binary tree of height $n$. In this electrical network, the resistance of each edge $e$ at distance $d$ from the root is defined by…

We study the bounded regions in a generic slice of the hyperplane arrangement in $\mathbb{R}^n$ consisting of the hyperplanes defined by $x_i$ and $x_i+x_j$. The bounded regions are in bijection with several classes of combinatorial…

For $d\ge 2$ and an odd prime power $q$, consider the vector space $\mathbb{F}_q^d$ over the finite field $\mathbb{F}_q$, where the distance between two points $(x_1,\ldots,x_d)$ and $(y_1,\ldots,y_d)$ is defined as $\sum_{i=1}^d…

Agreement forests continue to play a central role in the comparison of phylogenetic trees since their introduction more than 25 years ago. More specifically, they are used to characterise several distances that are based on tree…

Let $T$ be a tree with vertex set $\{1, \ldots, n\}$ such that each edge is assigned a nonzero weight. The squared distance matrix of $T,$ denoted by $\Delta,$ is the $n \times n$ matrix with $(i,j)$-element $d(i,j)^2,$ where $d(i,j)$ is…

The matching distance is a computationally tractable topological measure to compare multi-filtered simplicial complexes. We design efficient algorithms for approximating the matching distance of two bi-filtered complexes to any desired…

Geometric graphs appear in many real-world data sets, such as road networks, sensor networks, and molecules. We investigate the notion of distance between embedded graphs and present a metric to measure the distance between two geometric…

Inspired by [4] we present a new algorithm for uniformly random generation of ordered trees in which all occuring outdegrees can be specified by a given sequence of numbers. The method can be used for random generation of binary or n-ary…

Let $G$ be a connected graph on $n$ vertices and $D(G)$ its distance matrix. The formula for computing the determinant of this matrix in terms of the number of vertices is known when the graph is either a tree or {a} unicyclic graph. In…

We bound the mean distance in a connected graph which is not a tree in function of its order $n$ and its girth $g$. On one hand, we show that mean distance is at most $\frac{n+1}{3}-\frac{g(g^2-4)}{12n(n-1)}$ if $g$ is even and at most…

We study the size and structure of the largest common subtree (LCS) between two independent Bienaym\'e trees conditioned to have size $n$. When the trees are critical with finite $2$nd and $(2+\kappa)$th moment respectively for some…

The ternary betweenness relation of a tree, B(x,y,z) expresses that y is on the unique path between x and z. This notion can be extended to order-theoretic trees defined as partial orders such that the set of nodes larger than any node is…

Suppose we have n keys, n access probabilities for the keys, and n+1 access probabilities for the gaps between the keys. Let h_min(n) be the minimal height of a binary search tree for n keys. We consider the problem to construct an optimal…

The log-det distance between two aligned DNA sequences was introduced as a tool for statistically consistent inference of a gene tree under simple non-mixture models of sequence evolution. Here we prove that the log-det distance, coupled…

Optimal transport provides a metric which quantifies the dissimilarity between probability measures. For measures supported in discrete metric spaces, finding the optimal transport distance has cubic time complexity in the size of the…

For an undirected tree with $n$ edges labelled by single letters, we consider its substrings, which are labels of the simple paths between pairs of nodes. We prove that there are $O(n^{1.5})$ different palindromic substrings. This solves an…