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Manifold learning methods play a prominent role in nonlinear dimensionality reduction and other tasks involving high-dimensional data sets with low intrinsic dimensionality. Many of these methods are graph-based: they associate a vertex…

Machine Learning · Computer Science 2021-11-16 Joe Kileel , Amit Moscovich , Nathan Zelesko , Amit Singer

Graph Neural Networks (GNNs) have become the standard for graph representation learning but remain vulnerable to structural perturbations. We propose a novel framework that integrates persistent homology features with stability…

Machine Learning · Computer Science 2025-12-17 Jelena Losic

We explore the geometry of complex networks in terms of an n-dimensional Euclidean embedding represented by the Moore-Penrose pseudo-inverse of the graph Laplacian $(\bb L^+)$. The squared distance of a node $i$ to the origin in this…

Discrete Mathematics · Computer Science 2015-03-19 Gyan Ranjan , Zhi-Li Zhang

Graph Laplacian based algorithms for data lying on a manifold have been proven effective for tasks such as dimensionality reduction, clustering, and denoising. In this work, we consider data sets whose data points lie on a manifold that is…

Machine Learning · Computer Science 2024-07-01 Eitan Rosen , Paulina Hoyos , Xiuyuan Cheng , Joe Kileel , Yoel Shkolnisky

Persistent homology, a fundamental technique within Topological Data Analysis (TDA), captures structural and shape characteristics of graphs, yet encounters computational difficulties when applied to dynamic directed graphs. This paper…

Machine Learning · Computer Science 2024-08-20 Hao Li , Hao Jiang , Jiajun Fan , Dongsheng Ye , Liang Du

We introduce a consistent estimator for the homology (an algebraic structure representing connected components and cycles) of level sets of both density and regression functions. Our method is based on kernel estimation. We apply this…

Statistics Theory · Mathematics 2016-09-30 Omer Bobrowski , Sayan Mukherjee , Jonathan E. Taylor

This study proposes a novel heterogeneous graph convolutional neural network (HGCNN) to handle complex brain fMRI data at regional and across-region levels. We introduce a generic formulation of spectral filters on heterogeneous graphs by…

Computer Vision and Pattern Recognition · Computer Science 2023-02-24 Jinghan Huang , Moo K. Chung , Anqi Qiu

Topological data analysis, as a tool for extracting topological features and characterizing geometric shapes, has experienced significant development across diverse fields. Its key mathematical techniques include persistent homology and the…

Algebraic Topology · Mathematics 2024-04-19 Jian Liu , Dong Chen , Guo-Wei Wei

We present a unified pipeline for univariate time series classification via complex networks and persistent homology. A time series is mapped to a graph through one of five constructions across three families (visibility (natural and…

Algebraic Topology · Mathematics 2026-05-05 İsmail Güzel

Unsupervised graph representation learning aims to learn low-dimensional node embeddings without supervision while preserving graph topological structures and node attributive features. Previous graph neural networks (GNN) require a large…

Machine Learning · Computer Science 2020-09-04 Yanqiao Zhu , Yichen Xu , Feng Yu , Shu Wu , Liang Wang

We study properties of Graph Convolutional Networks (GCNs) by analyzing their behavior on standard models of random graphs, where nodes are represented by random latent variables and edges are drawn according to a similarity kernel. This…

Machine Learning · Statistics 2020-10-26 Nicolas Keriven , Alberto Bietti , Samuel Vaiter

We study data-driven representations for three-dimensional triangle meshes, which are one of the prevalent objects used to represent 3D geometry. Recent works have developed models that exploit the intrinsic geometry of manifolds and…

Machine Learning · Statistics 2018-06-19 Ilya Kostrikov , Zhongshi Jiang , Daniele Panozzo , Denis Zorin , Joan Bruna

Convolutional neural networks (CNNs) have been established as the main workhorse in image data processing; nonetheless, they require large amounts of data to train, often produce overconfident predictions, and frequently lack the ability to…

Computer Vision and Pattern Recognition · Computer Science 2025-10-14 Sarah Harkins Dayton , Hayden Everett , Ioannis Schizas , David L. Boothe , Vasileios Maroulas

Given a sample from a probability measure with support on a submanifold in Euclidean space one can construct a neighborhood graph which can be seen as an approximation of the submanifold. The graph Laplacian of such a graph is used in…

Statistics Theory · Mathematics 2007-06-27 Matthias Hein , Jean-Yves Audibert , Ulrike von Luxburg

Graph neural networks (GNNs) have emerged as a powerful tool for graph classification and representation learning. However, GNNs tend to suffer from over-smoothing problems and are vulnerable to graph perturbations. To address these…

Machine Learning · Computer Science 2021-11-01 Yuzhou Chen , Baris Coskunuzer , Yulia R. Gel

We study the approximation power of Graph Neural Networks (GNNs) on latent position random graphs. In the large graph limit, GNNs are known to converge to certain "continuous" models known as c-GNNs, which directly enables a study of their…

Machine Learning · Statistics 2021-06-01 Nicolas Keriven , Alberto Bietti , Samuel Vaiter

Hypergraphs are useful mathematical models for describing complex relationships among members of a structured graph, while hyperdigraphs serve as a generalization that can encode asymmetric relationships in the data. However, obtaining…

Algebraic Topology · Mathematics 2023-04-10 Dong Chen , Jian Liu , Jie Wu , Guo-Wei Wei

Persistent homology is a popular tool in Topological Data Analysis. It provides numerical characteristics of data sets which reflect global geometric properties. In order to be useful in practice, for example for feature generation in…

Computational Geometry · Computer Science 2020-02-17 Boris Goldfarb

The k-nearest neighbors (kNN) algorithm is a cornerstone of non-parametric classification in artificial intelligence, yet its deployment in large-scale applications is persistently constrained by the computational trade-off between…

Machine Learning · Computer Science 2026-01-26 Jiaye Li , Gang Chen , Hang Xu , Shichao Zhang

Hypergraphs, with their capacity to depict high-order relationships, have emerged as a significant extension of traditional graphs. Although Graph Neural Networks (GNNs) have remarkable performance in graph representation learning, their…

Machine Learning · Computer Science 2024-11-07 Khaled Mohammed Saifuddin , Mehmet Emin Aktas , Esra Akbas