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Many cellular components are present in such low numbers that individual stochastic production and degradation events lead to significant fluctuations in molecular abundances. Although feedback control can, in principle, suppress such…

Molecular Networks · Quantitative Biology 2025-12-25 Ryan Ripsman , Brayden Kell , Andreas Hilfinger

The fundamental `plasticity' of the nervous system (i.e high adaptability at different structural levels) is primarily based on Hebbian learning mechanisms that modify the synaptic connections. The modifications rely on neural activity and…

Adaptation and Self-Organizing Systems · Physics 2008-06-24 Gabor Szirtes , Zsolt Palotai , Andras Lorincz

Changes in a cell's external or internal conditions are usually reflected in the concentrations of the relevant transcription factors. These proteins in turn modulate the expression levels of the genes under their control and sometimes need…

Molecular Networks · Quantitative Biology 2013-08-01 Gasper Tkacik , Curtis G Callan , William Bialek

The response of neurons is highly sensitive to the stimulus. The stimulus can be associated with a direct injection in vitro experimentation (e.g., time dependent and independent inputs); or post-synaptic potentials resulting from the…

Neurons and Cognition · Quantitative Biology 2024-01-09 Afifurrahman , Mohd Hafiz Mohd , Farah Aini Abdullah

Cooperative interactions among the binding of multiple signaling molecules is a common mechanism for enhancing the sensitivity of biological signaling systems. It is widely assumed that this increase in sensitivity of the mean response…

Molecular Networks · Quantitative Biology 2007-05-23 William Bialek , Sima Setayeshgar

A steadily increasing body of evidence suggests that the brain performs probabilistic inference to interpret and respond to sensory input and that trial-to-trial variability in neural activity plays an important role. The neural sampling…

Neurons and Cognition · Quantitative Biology 2017-07-07 Ilja Bytschok , Dominik Dold , Johannes Schemmel , Karlheinz Meier , Mihai A. Petrovici

How does the size of a neural circuit influence its learning performance? Intuitively, we expect the learning capacity of a neural circuit to grow with the number of neurons and synapses. Larger brains tend to be found in species with…

Neurons and Cognition · Quantitative Biology 2019-05-09 Dhruva V Raman , Timothy O'Leary

Objective: Brain is a fantastic organ that helps creature adapting to the environment. Network is the most essential structure of brain, but the capability of a simple network is still not very clear. In this study, we try to expound some…

Neurons and Cognition · Quantitative Biology 2019-11-05 Xiang Zou , Lie Yao , Donghua Zhao , Liang Chen , Ying Mao

Understanding how the brain learns to compute functions reliably, efficiently and robustly with noisy spiking activity is a fundamental challenge in neuroscience. Most sensory and motor tasks can be described as dynamical systems and could…

Neurons and Cognition · Quantitative Biology 2017-05-24 Sophie Denève , Alireza Alemi , Ralph Bourdoukan

Exchange of molecules allows cells to exchange information. How robust is the information to changes in cell parameters? We use a mapping between the stochastic dynamics of two cells sharing a stimulatory molecule, and parameters akin to an…

Biological Physics · Physics 2024-07-10 Ismail Qunbar , Michael Vennettilli , Amir Erez

Most communication channels are subjected to noise. One of the goals of Information Theory is to add redundancy in the transmission of information so that the information is transmitted reliably and the amount of information transmitted…

Information Theory · Computer Science 2018-03-21 David Elkouss , David Pérez-García

Some systems cannot be predicted by classical theories and it is required the development of combined deterministic and stochastic theories that make used of noise for dynamical prediction. Noise is not always an interfering signal which…

Adaptation and Self-Organizing Systems · Physics 2019-05-14 Alexandra Pinto Castellanos

Most artificial networks today rely on dense representations, whereas biological networks rely on sparse representations. In this paper we show how sparse representations can be more robust to noise and interference, as long as the…

Machine Learning · Computer Science 2019-04-03 Subutai Ahmad , Luiz Scheinkman

Suprathreshold stochastic resonance (SSR) is a form of noise enhanced signal transmission that occurs in a parallel array of independently noisy identical threshold nonlinearities, including model neurons. Unlike most forms of stochastic…

Statistical Mechanics · Physics 2007-07-02 Mark D. McDonnell , Nigel G. Stocks , Derek Abbott

The interior of a living cell is an active, fluctuating, and crowded environment. Yet, it maintains a high level of coherent organization, which is readily apparent in the intracellular transport network. Membrane-bound compartments called…

Biological systems are characterized by the ubiquitous roles of weak, that is, non-covalent molecular interactions, small, often very small, numbers of specific molecules per cell, and Brownian motion. These combine to produce stochastic…

Cell Behavior · Quantitative Biology 2023-04-27 Michael W. Klymkowsky

Natural intelligence (NI) consistently achieves more with less. Infants learn language, develop abstract concepts, and acquire sensorimotor skills from sparse data, all within tight neural and energy limits. In contrast, today's AI relies…

Neurons and Cognition · Quantitative Biology 2025-06-10 Laura Cohen , Xavier Hinaut , Lilyana Petrova , Alexandre Pitti , Syd Reynal , Ichiro Tsuda

The cerebrum of mammals spans a vast range of sizes and yet has a very regular structure. The amount of folding of the cortical surface and the proportion of white matter gradually increase with size, but the underlying mechanisms remain…

Neurons and Cognition · Quantitative Biology 2022-06-14 Marc H. E. de Lussanet

Codifying memories is one of the fundamental problems of modern Neuroscience. The functional mechanisms behind this phenomenon remain largely unknown. Experimental evidence suggests that some of the memory functions are performed by…

Neurons and Cognition · Quantitative Biology 2022-05-17 Ivan Y. Tyukin , Alexander N. Gorban , Carlos Calvo , Julia Makarova , Valeri A. Makarov

Dilute magnetic nanoparticle systems exhibit slow dynamics [1] due to a broad distribution of relaxation times that can be traced to a correspondingly broad distribution of particle sizes [1]. However, at higher concentrations interparticle…

Disordered Systems and Neural Networks · Physics 2007-05-23 Derek Walton