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The action potential propagating in a nerve fibre generates accompanying mechanical and thermal effects. The whole signal is therefore an ensemble which includes primary and secondary components. The primary components of a signal are the…

Biological Physics · Physics 2018-12-14 Jüri Engelbrecht , Kert Tamm , Tanel Peets

This paper is an introduction to the membrane potential equation for neurons. Its properties are described, as well as sample applications. Networks of these equations can be used for modeling neuronal systems, which also process images and…

Neurons and Cognition · Quantitative Biology 2018-01-29 Matthias S. Keil

ECM components, such as the Perineuronal net (PNN), one of the most prevalent parts surrounding the neuronal cell. PNN is a protective net-like structure regulating neuronal activity such as neurotransmission, charge balance and generates…

Biological Physics · Physics 2022-01-03 KAH Al Mahmud , Fuad Hasan , Md Ishak Khan , Ashfaq Adnan

It is well-known that modern computer vision systems often exhibit behaviors misaligned with those of humans: from adversarial attacks to image corruptions, deep learning vision models suffer in a variety of settings that humans capably…

Computer Vision and Pattern Recognition · Computer Science 2024-10-18 Leonard Tang , Dan Ley

Computational modeling helps neuroscientists to integrate and explain experimental data obtained through neurophysiological and anatomical studies, thus providing a mechanism by which we can better understand and predict the principles of…

Neurons and Cognition · Quantitative Biology 2023-09-22 Parvin Zarei Eskikand , David B Grayden , Tatiana Kameneva , Anthony N Burkitt , Michael R Ibbotson

It has been widely assumed that a neural network cannot be recovered from its outputs, as the network depends on its parameters in a highly nonlinear way. Here, we prove that in fact it is often possible to identify the architecture,…

Machine Learning · Computer Science 2020-02-25 David Rolnick , Konrad P. Kording

The approximation capability of ANNs and their RNN instantiations, is strongly correlated with the number of parameters packed into these networks. However, the complexity barrier for human understanding, is arguably related to the number…

Neural and Evolutionary Computing · Computer Science 2023-03-10 Julian Lemmel , Radu Grosu

Wounds in epithelial tissues compromise their vital role in homeostasis. A rapid and efficient wound healing encompasses different mechanisms, which includes the formation of a contractile actin-myosin cable around its edge, known as the…

Soft Condensed Matter · Physics 2024-03-22 R. F. Almada , N. A. M. Araujo , P. Patricio

Drug delivery through electroporation could be highly beneficial for the treatment of different types of diseased tissues within the human body. In this work, a mathematical model of reversible tissue electroporation is presented for…

Functional Analysis · Mathematics 2022-08-03 Nilay Mondal , D. C. Dalal

Consider a large number $n$ of neurons, each being connected to approximately $N$ other ones, chosen at random. When a neuron spikes, which occurs randomly at some rate depending on its electric potential, its potential is set to a minimum…

Probability · Mathematics 2020-03-19 Nicolas Fournier , Etienne Tanré , Romain Veltz

Manual preparation of tissue slices for microscopy imaging can introduce tissue tears and overlaps. Typically, further digital processing algorithms such as registration and 3D reconstruction from tissue image stacks cannot handle images…

Computer Vision and Pattern Recognition · Computer Science 2019-05-23 Zahra Montazeri , Gopi M

An understanding of the underlying mechanism of side--branching is paramount in controlling and/or therapeutically treating mammalian organs, such as lungs, kidneys, and glands. Motivated by an activator-inhibitor-substrate approach that is…

Pattern Formation and Solitons · Physics 2021-07-20 Arik Yochelis

Stroke is one of the main causes of human disabilities. Experimental observations indicate that several mechanisms are activated during the recovery of functional activity after a stroke. Here we unveil how the brain recovers by explaining…

Neurons and Cognition · Quantitative Biology 2019-11-19 Damian Berger , Emanuele Varriale , Laurens Michiels van Kessenich , Hans J. Herrmann , Lucilla de Arcangelis

Metastatic tumors often invade healthy neighboring tissues by forming multicellular finger-like protrusions emerging from the cancer mass. To understand the mechanical context behind this phenomenon, we here develop a minimalist fluid model…

Biological Physics · Physics 2018-09-18 Michał Bogdan , Thierry Savin

In many information processing systems, it may be desirable to ensure that any change of the input, whether by shifting or scaling, results in a corresponding change in the system response. While deep neural networks are gradually replacing…

Computer Vision and Pattern Recognition · Computer Science 2024-02-22 Sébastien Herbreteau , Emmanuel Moebel , Charles Kervrann

This paper proposes a neuronal circuitry layout and synaptic plasticity principles that allow the (pyramidal) neuron to act as a "combinatorial switch". Namely, the neuron learns to be more prone to generate spikes given those combinations…

Biological Physics · Physics 2017-05-09 Marat M. Rvachev

Inspired by the brain, we present a physical alternative to traditional digital neural networks -- a microfluidic network in which nodes are connected by conical, electrolyte-filled channels acting as memristive iontronic synapses. Their…

Soft Condensed Matter · Physics 2025-11-07 Monica Conte , René van Roij , Marjolein Dijkstra

This essay is a recapitulation of an earlier Kramers-Kronig analysis of biological tissue, published in 2010, "Kramers-Kronig analysis of biological skin". The intent is to both complement and bolster the antecedent analysis by furnishing…

Tissues and Organs · Quantitative Biology 2011-12-22 Luisiana X. Cundin

The task of MRI fingerprinting is to identify tissue parameters from complex-valued MRI signals. The prevalent approach is dictionary based, where a test MRI signal is compared to stored MRI signals with known tissue parameters and the most…

Computer Vision and Pattern Recognition · Computer Science 2017-07-04 Patrick Virtue , Stella X. Yu , Michael Lustig

Bone is a multiscale heterogeneous materiel of which principal function is to support the body structure and to resist mechanical loading and fractures. Bone strength does not depend only on the quantity and quality of bone which is…

Tissues and Organs · Quantitative Biology 2011-07-07 Abdelwahed Barkaoui , Awad Bettamer , Ridha Hambli