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Persistent homology, a technique from computational topology, has recently shown strong empirical performance in the context of graph classification. Being able to capture long range graph properties via higher-order topological features,…

Machine Learning · Computer Science 2024-12-20 Rubén Ballester , Bastian Rieck

Persistent homology was shown by Carlsson and Zomorodian to be homology of graded chain complexes with coefficients in the graded ring $\kk[t]$. As such, the behavior of persistence modules -- graded modules over $\kk[t]$ is an important…

Computational Geometry · Computer Science 2013-02-18 Primoz Skraba , Mikael Vejdemo-Johansson

Accurate delineation of fine-scale structures is a very important yet challenging problem. Existing methods use topological information as an additional training loss, but are ultimately making pixel-wise predictions. In this paper, we…

Image and Video Processing · Electrical Eng. & Systems 2022-10-04 Xiaoling Hu , Dimitris Samaras , Chao Chen

Topology applied to real world data using persistent homology has started to find applications within machine learning, including deep learning. We present a differentiable topology layer that computes persistent homology based on level set…

The aim of this paper is to present a method for computation of persistent homology that performs well at large filtration values. To this end we introduce the concept of filtered covers. We show that the persistent homology of a bounded…

Algebraic Topology · Mathematics 2018-05-29 Nello Blaser , Morten Brun

We investigate combinatorial dynamical systems on simplicial complexes considered as {\em finite topological spaces}. Such systems arise in a natural way from sampling dynamics and may be used to reconstruct some features of the dynamics…

Algebraic Topology · Mathematics 2018-07-12 Tamal K. Dey , Mateusz Juda , Tomasz Kapela , Jacek Kubica , Michal Lipinski , Marian Mrozek

The focus of this article is to develop computationally efficient mathematical morphology operators on hypergraphs. To this aim we consider lattice structures on hypergraphs on which we build morphological operators. We develop a pair of…

Discrete Mathematics · Computer Science 2014-02-19 V. Bino Sebastian , A Unnikrishnan , Kannan Balakrishnan , P. B Ramkumar

We extend the persistence algorithm, viewed as an algorithm computing the homology of a complex of free persistence or graded modules, to complexes of modules that are not free. We replace persistence modules by their presentations and…

Algebraic Topology · Mathematics 2024-03-19 Tamal K. Dey , Florian Russold , Shreyas N. Samaga

In this paper, we study the persistent homology of the offset filtration of algebraic varieties. We prove the algebraicity of two quantities central to the computation of persistent homology. Moreover, we connect persistent homology and…

Algebraic Geometry · Mathematics 2019-08-21 Emil Horobet , Madeleine Weinstein

Floer theory was originally devised to estimate the number of 1-periodic orbits of Hamiltonian systems. In earlier works, we constructed Floer homology for homoclinic orbits on two dimensional manifolds using combinatorial techniques. In…

Symplectic Geometry · Mathematics 2017-06-07 Sonja Hohloch

We construct Hodge filtered cohomology groups for complex manifolds that combine the topological information of generalized cohomology theories with geometric data of Hodge filtered holomorphic forms. This theory provides a natural…

Algebraic Topology · Mathematics 2017-05-17 Michael J. Hopkins , Gereon Quick

Topological data analysis and its main method, persistent homology, provide a toolkit for computing topological information of high-dimensional and noisy data sets. Kernels for one-parameter persistent homology have been established to…

Machine Learning · Computer Science 2019-06-06 René Corbet , Ulderico Fugacci , Michael Kerber , Claudia Landi , Bei Wang

Persistent homology is a popular data analysis technique that is used to capture the changing topology of a filtration associated with some simplicial complex $K$. These topological changes are summarized in persistence diagrams. We propose…

Computational Geometry · Computer Science 2018-10-11 Tamal K. Dey , Ryan Slechta

In Mathematical Morphology (MM), connected filters based on dynamics are used to filter the extrema of an image. Similarly, persistence is a concept coming from Persistent Homology (PH) and Morse Theory (MT) that represents the stability of…

Computer Vision and Pattern Recognition · Computer Science 2022-05-26 Nicolas Boutry , Laurent Najman , Thierry Géraud

The subject of persistent homology has vitalized applications of algebraic topology to point cloud data and to application fields far outside the realm of pure mathematics. The area has seen several fundamentally important results that are…

Algebraic Topology · Mathematics 2013-11-12 Mikael Vejdemo-Johansson

We present a new tool for data analysis: persistence discrete homology, which is well-suited to analyze filtrations of graphs. In particular, we provide a novel way of representing high-dimensional data as a filtration of graphs using…

Algebraic Topology · Mathematics 2025-06-23 Chris Kapulkin , Nathan Kershaw

Persistent homology is a leading tool in topological data analysis (TDA). Many problems in TDA can be solved via homological -- and indeed, linear -- algebra. However, matrices in this domain are typically large, with rows and columns…

Algebraic Topology · Mathematics 2021-08-23 Haibin Hang , Chad Giusti , Lori Ziegelmeier , Gregory Henselman-Petrusek

To analyze the topological properties of the given discrete data, one needs to consider a continuous transform called filtration. Persistent homology serves as a tool to track changes of homology in the filtration. The outcome of the…

Optimization and Control · Mathematics 2024-10-08 Keunsu Kim , Jae-Hun Jung

We describe an approach to bounded-memory computation of persistent homology and betti barcodes, in which a computational state is maintained with updates introducing new edges to the underlying neighbourhood graph and percolating the…

Computational Geometry · Computer Science 2011-06-01 Mikael Vejdemo-Johansson

Determining whether two graphs are isomorphic is a fundamental problem with practical applications in areas such as molecular chemistry or social network analysis, yet it remains a challenging task, with exact solutions often being…