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The inherent complexity of biological systems gives rise to complicated mechanistic models with a large number of parameters. On the other hand, the collective behavior of these systems can often be characterized by a relatively small…

Quantitative Methods · Quantitative Biology 2016-06-15 Mark K. Transtrum , Peng Qiu

We show that two widely accepted model reduction techniques, Balanced Truncation and Balanced Singular Perturbation Approximation, can be derived as limiting approximations of a carefully constructed parameterization of Linear Time…

Optimization and Control · Mathematics 2019-01-10 Philip E. Paré , David Grimsman , Alma T. Wilson , Mark K. Transtrum , Sean Warnick

The framework of nuclear energy density functionals has been employed to describe nuclear structure phenomena for a wide range of nuclei. Recently, statistical properties of a given nuclear model, such as parameter confidence intervals and…

Nuclear Theory · Physics 2023-03-29 M. Imbrišak , K. Nomura

Model reduction attempts to guarantee a desired "model quality", e.g. given in terms of accuracy requirements, with as small a model size as possible. This article highlights some recent developments concerning this issue for the so called…

Numerical Analysis · Mathematics 2015-03-03 Wolfgang Dahmen

Nonlinear dimensionality reduction or, equivalently, the approximation of high-dimensional data using a low-dimensional nonlinear manifold is an active area of research. In this paper, we will present a thematically different approach to…

Machine Learning · Computer Science 2019-12-21 Kelum Gajamannage , Randy Paffenroth

Probabilistic variants of Model Order Reduction (MOR) methods have recently emerged for improving stability and computational performance of classical approaches. In this paper, we propose a probabilistic Reduced Basis Method (RBM) for the…

Numerical Analysis · Mathematics 2023-12-06 Marie Billaud-Friess , Arthur Macherey , Anthony Nouy , Clémentine Prieur

This paper presents a novel non-linear model reduction method: Probabilistic Manifold Decomposition (PMD), which provides a powerful framework for constructing non-intrusive reduced-order models (ROMs) by embedding a high-dimensional system…

Numerical Analysis · Mathematics 2026-01-09 Jiaming Guo , Dunhui Xiao

A study of parameter sensitivity of nuclear energy density functionals, initiated in the first part of this work \cite{NV.16}, is extended by the inclusion of data on ground-state properties of finite nuclei in the application of the…

Nuclear Theory · Physics 2017-05-24 Tamara Nikšić , Marko Imbrišak , Dario Vretenar

Large scale dynamical systems (e.g. many nonlinear coupled differential equations) can often be summarized in terms of only a few state variables (a few equations), a trait that reduces complexity and facilitates exploration of behavioral…

Manifold models provide low-dimensional representations that are useful for processing and analyzing data in a transformation-invariant way. In this paper, we study the problem of learning smooth pattern transformation manifolds from image…

Computer Vision and Pattern Recognition · Computer Science 2013-05-20 Elif Vural , Pascal Frossard

One of the very few mathematically rigorous nonlinear model reduction methods is the restriction of a dynamical system to a low-dimensional, sufficiently smooth, attracting invariant manifold. Such manifolds are usually found using local…

Dynamical Systems · Mathematics 2025-05-12 Bálint Kaszás , George Haller

Probabilistic Manifold Decomposition (PMD)\cite{doi:10.1137/25M1738863}, developed in our earlier work, provides a nonlinear model reduction by embedding high-dimensional dynamics onto low-dimensional probabilistic manifolds. The PMD has…

Numerical Analysis · Mathematics 2026-01-13 Jiaming Guo , Dunhui Xiao

The perceived advantage of machine learning (ML) models is that they are flexible and can incorporate a large number of features. However, many of these are typically correlated or dependent, and incorporating all of them can hinder model…

Applications · Statistics 2025-03-11 Anwesha Bhattacharyya , Yaqun Wang , Joel Vaughan , Vijayan N. Nair

Several important algorithms for machine learning and data analysis use pairwise distances as input. On Riemannian manifolds these distances may be prohibitively costly to compute, in particular for large datasets. To tackle this problem,…

Differential Geometry · Mathematics 2019-04-29 Philipp Harms , Elodie Maignant , Stefan Schlager

Functions of one or more variables are usually approximated with a basis: a complete, linearly-independent system of functions that spans a suitable function space. The topic of this paper is the numerical approximation of functions using…

Numerical Analysis · Mathematics 2018-11-07 Ben Adcock , Daan Huybrechs

Due to their flexibility, frames of Hilbert spaces are attractive alternatives to bases in approximation schemes for problems where identifying a basis is not straightforward or even feasible. Computing a best approximation using frames,…

Numerical Analysis · Mathematics 2020-07-08 Ben Adcock , Mohsen Seifi

Thermodynamic simulation of chemical and metallurgical systems is the only method to predict their equilibrium composition and is the most important application of chemical thermodynamics. The conventional strategy of simulation is always…

Chemical Physics · Physics 2007-05-23 B. Zilbergleyt

One approach to parametric and adaptive model reduction is via the interpolation of orthogonal bases, subspaces or positive definite system matrices. In all these cases, the sampled inputs stem from matrix sets that feature a geometric…

Numerical Analysis · Mathematics 2022-12-16 Ralf Zimmermann

The reduced basis method (RBM) empowers repeated and rapid evaluation of parametrized partial differential equations through an offline-online decomposition, a.k.a. a learning-execution process. A key feature of the method is a greedy…

Numerical Analysis · Mathematics 2020-09-16 Jiahua Jiang , Yanlai Chen

Due to the widespread use of complex machine learning models in real-world applications, it is becoming critical to explain model predictions. However, these models are typically black-box deep neural networks, explained post-hoc via…

Machine Learning · Computer Science 2022-10-20 Filip Radenovic , Abhimanyu Dubey , Dhruv Mahajan
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