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Accurate, yet computationally efficient energy functions are essential for state-of-the art molecular dynamics (MD) studies of condensed phase systems. Here, a generic workflow based on a combination of machine learning-based and empirical…

Chemical Physics · Physics 2025-07-01 Eric D. Boittier , Silvan Käser , Markus Meuwly

We discuss how the Perfectly Matched Layer (PML) can be adapted to numerical simulations of nonlinear and matter wave systems, such as Bose-Einstein condensates. We also present some examples which illustrate the benefits of using the PML…

Soft Condensed Matter · Physics 2007-05-23 C. Farrell , U. Leonhardt

Two types of approaches to modeling molecular systems have demonstrated high practical efficiency. Density functional theory (DFT), the most widely used quantum chemical method, is a physical approach predicting energies and electron…

Chemical Physics · Physics 2020-03-02 Anton V. Sinitskiy , Vijay S. Pande

The RMPCDMD software package performs hybrid Molecular Dynamics simulations, coupling Multiparticle Collision Dynamics to model the solvent and Molecular Dynamics to model suspended colloids, including hydrodynamics, thermal fluctuations,…

Computational Physics · Physics 2017-01-13 Pierre de Buyl , Mu-Jie Huang , Laurens Deprez

After many years of development of the basic tools, quantum simulation with ultracold atoms has now reached the level of maturity where it can be used to investigate complex quantum processes. Planning of new experiments and upgrading…

Quantum Gases · Physics 2020-07-13 Florian Schäfer , Takeshi Fukuhara , Seiji Sugawa , Yosuke Takasu , Yoshiro Takahashi

Quantum simulation is making a significant impact on scientific research. The prevailing tendency of the field is to build quantum simulators that get closer to real-world systems of interest, in particular electronic materials. However,…

Simulations of colloidal suspensions consisting of mesoscopic particles and smaller species such as ions or depletants are computationally challenging as different length and time scales are involved. Here, we introduce a machine learning…

Soft Condensed Matter · Physics 2021-12-01 Gerardo Campos-Villalobos , Emanuele Boattini , Laura Filion , Marjolein Dijkstra

We propose a design for the construction of a laboratory system based on present-day technology which reproduces and thereby simulates the quantum dynamics of the O(3) nonlinear sigma model. Apart from its relevance in condensed-matter…

Quantum Physics · Physics 2009-11-10 Ralf Schützhold , Sarah Mostame

This paper introduces QuanUML, an extension of the Unified Modeling Language (UML) tailored for quantum software systems. QuanUML integrates quantum-specific constructs, such as qubits and quantum gates, into the UML framework, enabling the…

Software Engineering · Computer Science 2025-06-06 Xiaoyu Guo , Shinobu Saito , Jianjun Zhao

We use a two-fluid model combining the quantum Green's function technique for the electrons and a classical HNC description for the ions to calculate the high-density equation of state of hydrogen. This approach allows us to describe fully…

Plasma Physics · Physics 2011-08-25 J. Vorberger , D. O. Gericke , W. -D. Kraeft

Spectroscopy is an indispensable tool in understanding the structures and dynamics of molecular systems. However computational modelling of spectroscopy is challenging due to the exponential scaling of computational complexity with system…

Quantum Physics · Physics 2021-06-22 Chee-Kong Lee , Chang-Yu Hsieh , Shengyu Zhang , Liang Shi

Recently developed quantum algorithms suggest that in principle, quantum computers can solve problems such as simulation of physical systems more efficiently than classical computers. Much remains to be done to implement these conceptual…

Quantum Physics · Physics 2009-11-10 C. Negrevergne , R. Somma , G. Ortiz , E. Knill , R. Laflamme

Accelerated discovery with machine learning (ML) has begun to provide the advances in efficiency needed to overcome the combinatorial challenge of computational materials design. Nevertheless, ML-accelerated discovery both inherits the…

Materials Science · Physics 2022-05-09 Chenru Duan , Fang Liu , Aditya Nandy , Heather J. Kulik

An introductory formal languages course exposes advanced undergraduate and early graduate students to automata theory, grammars, constructive proofs, computability, and decidability. Programming students find these topics to be challenging…

Formal Languages and Automata Theory · Computer Science 2014-12-17 Marco T. Morazán , Rosario Antunez

Molecular dynamics simulations have a prominent role in biophysics and drug discovery due to the atomistic information they provide on the structure, energetics and dynamics of biomolecules. Specialized software packages are required to…

Computational Physics · Physics 2013-10-08 Toni Giorgino

Density-functional theory is applied to compute the ground-state energies of quantum hard-sphere solids. The modified weighted-density approximation is used to map both the Bose and the Fermi solid onto a corresponding uniform Bose liquid,…

Statistical Mechanics · Physics 2009-10-30 A. R. Denton , P. Nielaba , N. W. Ashcroft

Complex real-time control system is a software dense and algorithms dense system, which needs modern software engineering techniques to design. UML is an object-oriented industrial standard modeling language, used more and more in real-time…

Software Engineering · Computer Science 2011-11-09 He Hai , Zhong Yi-Fang , Cai Chi-Lan

Simulating the nonequilibrium dynamics of thermal states is a fundamental problem across scales from high energy to condensed matter physics. Quantum computers may provide a way to solve this problem efficiently. Preparing a thermal state…

Quantum Physics · Physics 2023-11-03 Jason Saroni , Henry Lamm , Peter P. Orth , Thomas Iadecola

Due to the superiority and noteworthy progress of Quantum Computing (QC) in a lot of applications such as cryptography, chemistry, Big data, machine learning, optimization, Internet of Things (IoT), Blockchain, communication, and many more.…

Quantum Physics · Physics 2020-06-23 Zainab Abohashima , Mohamed Elhosen , Essam H. Houssein , Waleed M. Mohamed

This article presents a review of the current state of the art in the research field of cold and ultracold molecules. It serves as an introduction to the Special Issue of the New Journal of Physics on Cold and Ultracold Molecules and…

Quantum Physics · Physics 2010-10-04 Lincoln D. Carr , David DeMille , Roman V. Krems , Jun Ye
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