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External flows of energy, entropy, and matter can cause sudden transitions in the stability of biological and industrial systems, fundamentally altering their dynamical function. How might we control and design these transitions in chemical…

Molecular Networks · Quantitative Biology 2023-06-19 Zachary G. Nicolaou , Schuyler B. Nicholson , Adilson E. Motter , Jason R. Green

Flagellar motors enable bacteria to navigate their environments by switching rotation direction in response to external cues with high sensitivity. Previous work suggested that ultrasensitivity of the flagellar motor originates from…

Biological Physics · Physics 2025-02-06 Henry H. Mattingly , Yuhai Tu

Complex networks play a fundamental role in understanding phenomena from the collective behavior of spins, neural networks, and power grids to the spread of diseases. Topological phenomena in such networks have recently been exploited to…

Life is characterized by a myriad of complex dynamic processes allowing organisms to grow, reproduce, and evolve. Physical approaches for describing systems out of thermodynamic equilibrium have been increasingly applied to living systems,…

Biological Physics · Physics 2020-12-16 Xiaona Fang , Karsten Kruse , Ting Lu , Jin Wang

Out-of-equilibrium phases in many-body systems constitute a new paradigm in quantum matter - they exhibit dynamical properties that may otherwise be forbidden by equilibrium thermodynamics. Among these non-equilibrium phases are…

Quantum Physics · Physics 2025-10-29 M. Will , T. A. Cochran , E. Rosenberg , B. Jobst , N. M Eassa , P. Roushan , M. Knap , A. Gammon-Smith , F. Pollmann

In striking contrast to equilibrium systems, inertia can profoundly alter the structure of active systems. Here, we demonstrate that driven systems can exhibit effective equilibrium-like states with increasing particle inertia, despite…

Soft Condensed Matter · Physics 2023-02-23 Ahmad K. Omar , Katherine Klymko , Trevor GrandPre , Phillip L. Geissler , John F. Brady

The population dynamics and stability of ecosystems of interacting species is studied from the perspective of non-equilibrium thermodynamics by assuming that species, through their biotic and abiotic interactions, are units of entropy…

Biological Physics · Physics 2007-05-23 Karo Michaelian

Bulk-boundary correspondence is a fundamental principle in topological physics. In recent years, there have been considerable efforts in extending the idea of geometry and topology to classical stochastic systems far from equilibrium.…

Mesoscale and Nanoscale Physics · Physics 2024-05-02 Taro Sawada , Kazuki Sone , Kazuki Yokomizo , Yuto Ashida , Takahiro Sagawa

We study the open system dynamics and steady states of two dimensional Floquet topological insulators: systems in which a topological Floquet-Bloch spectrum is induced by an external periodic drive. We solve for the bulk and edge state…

Mesoscale and Nanoscale Physics · Physics 2018-06-13 Iliya Esin , Mark S. Rudner , Gil Refael , Netanel H. Lindner

In a nanoscale molecular junction at finite bias voltage,the intra-molecular distribution of vibrational energy can strongly deviate from the thermal equilibrium distribution and specific vibrational modes can be selectively excited in a…

Mesoscale and Nanoscale Physics · Physics 2015-05-19 Rainer Härtle , Roie Volkovich , Michael Thoss , Uri Peskin

Topological edge modes are excitations that are localized at the materials' edges and yet are characterized by a topological invariant defined in the bulk. Such bulk-edge correspondence has enabled the creation of robust electronic,…

Mesoscale and Nanoscale Physics · Physics 2020-11-30 Ananya Ghatak , Martin Brandenbourger , Jasper van Wezel , Corentin Coulais

Biological assemblies such as chromosomes, membranes, and the cytoskeleton are driven out of equilibrium at the nanoscale by enzymatic activity and molecular motors. Similar non-equilibrium dynamics can be realized in synthetic systems,…

Biological Physics · Physics 2020-06-04 Federica Mura , Grzegorz Gradziuk , Chase P. Broedersz

The behavior of some stochastic chemical reaction networks is largely unaffected by slight inaccuracies in reaction rates. We formalize the robustness of state probabilities to reaction rate deviations, and describe a formal connection…

Computational Complexity · Computer Science 2009-01-28 David Soloveichik

Reaction networks are widely used models to describe biochemical processes. Stochastic fluctuations in the counts of biological macromolecules have amplified consequences due to their small population sizes. This makes it necessary to favor…

Probability · Mathematics 2022-02-28 Daniele Cappelletti , Badal Joshi

The influence of nonequilibrium bulk conditions on the properties of the interfaces exhibited by a kinetic Ising--like model system with nonequilibrium steady states is studied. The system is maintained out of equilibrium by perturbing the…

Statistical Mechanics · Physics 2009-11-10 P. I. Hurtado , P. L. Garrido , J. Marro

Understanding the role of non-equilibrium driving in self-organization is crucial for developing a predictive description of biological systems, yet it is impeded by their complexity. The actin cytoskeleton serves as a paradigm for how…

Soft Condensed Matter · Physics 2020-12-22 Yuqing Qiu , Michael Nguyen , Glen M. Hocky , Aaron R. Dinner , Suriyanarayanan Vaikuntanathan

Topological edge states in gaps of non-Hermitian systems are robust due to topological protection. Using the non-Hermitian Floquet Su-Schrieffer-Heeger model, we show that this robustness can break down: edge states may be suppressed by…

Quantum Physics · Physics 2025-10-13 Hong Wu , Xue-Min Yang , Hui Liu

Non-typical transport phenomena may arise when randomly driven particles remain in an active relationship with the environment instead of being passive. If we attribute to Brownian particles an ability to induce alterations of the…

Statistical Mechanics · Physics 2009-10-31 Piotr Garbaczewski

Fluctuation theorems are fundamental extensions of the second law of thermodynamics for small nonequilibrium systems. While work and heat are equally important forms of energy exchange, fluctuation relations have not been experimentally…

Statistical Mechanics · Physics 2022-02-24 Markus Rademacher , Michael Konopik , Maxime Debiossac , David Grass , Eric Lutz , Nikolai Kiesel

Detecting and quantifying non-equilibrium activity is essential for studying internally driven assemblies, including synthetic active matter and complex living systems such as cells or tissue. We discuss a non-invasive approach of measuring…

Biological Physics · Physics 2019-05-22 Grzegorz Gradziuk , Federica Mura , Chase P. Broedersz