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This survey paper focuses on modulation aspects of molecular communication, an emerging field focused on building biologically-inspired systems that embed data within chemical signals. The primary challenges in designing these systems are…

Emerging Technologies · Computer Science 2020-12-29 Mehmet Sukru Kuran , H. Birkan Yilmaz , Ilker Demirkol , Nariman Farsad , Andrea Goldsmith

Synthesizability remains a critical bottleneck in generative molecular design. While recent advances have addressed synthesizability in 2D graphs, extending these constraints to 3D for geometry-based conditional generation remains largely…

This paper studies the mitigation of intersymbol interference in a diffusive molecular communication system using enzymes that freely diffuse in the propagation environment. The enzymes form reaction intermediates with information molecules…

Information Theory · Computer Science 2014-01-21 Adam Noel , Karen C. Cheung , Robert Schober

In this paper, we consider a molecular diffusion based communications link that conveys information on the macro-scale (several metres). The motivation is to apply molecular-based communications to challenging electromagnetic environments.…

Networking and Internet Architecture · Computer Science 2016-11-18 Siyi Wang , Weisi Guo , Song Qiu , Mark D. McDonnell

Generative models for molecules based on sequential line notation (e.g. SMILES) or graph representation have attracted an increasing interest in the field of structure-based drug design, but they struggle to capture important 3D spatial…

Machine Learning · Computer Science 2023-12-12 Wei Feng , Lvwei Wang , Zaiyun Lin , Yanhao Zhu , Han Wang , Jianqiang Dong , Rong Bai , Huting Wang , Jielong Zhou , Wei Peng , Bo Huang , Wenbiao Zhou

We propose a framework for the derivation and evaluation of distributed iterative algorithms for receiver cooperation in interference-limited wireless systems. Our approach views the processing within and collaboration between receivers as…

Information Theory · Computer Science 2012-04-18 Mihai-Alin Badiu , Carles Navarro Manchón , Vasile Bota , Bernard Henri Fleury

Exact analytical channel models for molecular communication via diffusion (MCvD) systems involving multiple fully absorbing receivers (FARs) in a three-dimensional (3- D) medium are hard to obtain due to the mathematical intractability of…

Information Theory · Computer Science 2020-09-15 Nithin V. Sabu , Neeraj Varshney , Abhishek K. Gupta

The geometry-based stochastic channel models (GSCM), which can describe realistic channel impulse responses, often rely on the existence of both {\em local} and {\em far} scatterers. However, their visibility from both the base station (BS)…

Signal Processing · Electrical Eng. & Systems 2023-08-22 Anish Pradhan , Harpreet S. Dhillon , Fredrik Tufvesson , Andreas F. Molisch

In this paper, we study the key properties of multi-antenna two-tier networks under different system configurations. Based on stochastic geometry, we derive the expressions and approximations for the users' average data rate. Through the…

Information Theory · Computer Science 2016-10-25 Zheng Chen , Ling Qiu , Xiaowen Liang

This paper considers large random wireless networks where transmit-and-receive node pairs communicate within a certain range while sharing a common spectrum. By modeling the spatial locations of nodes based on stochastic geometry,…

Information Theory · Computer Science 2014-10-29 Namyoon Lee , Francois Baccelli , Robert W. Heath

Molecular communication (MC) is a bio-inspired method of transmitting information using biochemical signals, promising for novel medical, agricultural, and environmental applications at the intersection of bio-, nano-, and communication…

Emerging Technologies · Computer Science 2024-08-20 Eren Akyol , Ahmet Baha Ozturk , Iman Mokari Bolhassan , Murat Kuscu

Simulation involves predicting responses of a physical system. In this article, we simulate opto-acoustic signals generated in a three-dimensional volume due to absorption of an optical pulse. A separable computational model is developed…

Computational Physics · Physics 2021-07-22 Jason Zalev , Michael C. Kolios

This paper presents a statistical block fading channel model for multiuser massive MIMO system. The proposed channel model is evolved from correlation based stochastic channel model (CBSCM) but in addition to the properties of CBSCM, it has…

Information Theory · Computer Science 2016-04-05 Suresh Dahiya

Using the notion of effective distance proposed by Brockmann and Helbing, complex spatiotemporal processes of epidemic spreading can be reduced to circular wave propagation patterns with well-defined wavefronts. This hidden homogeneity of…

Physics and Society · Physics 2018-02-13 Yifan Chen , Yu Zhou , Ross Murch , Tadashi Nakano

We show that a stochastic approach enables calculations of the optical properties of large 2-dimensional and nanotubular excitonic molecular aggregates. Previous studies of such systems relied on numerically diagonalizing the dense and…

In this paper, we present a communication protocol between a pair of biological nanomachines, transmitter and receiver, built upon molecular communications in an aqueous environment. In our proposal, the receiver, acting as a control node,…

Emerging Technologies · Computer Science 2016-11-17 Luca Felicetti , Mauro Femminella , Gianluca Reali , Tadashi Nakano , Athanasios V. Vasilakos

Integrated sensing and communication (ISAC) is increasingly recognized as a pivotal technology for next-generation cellular networks, offering mutual benefits in both sensing and communication capabilities. This advancement necessitates a…

Information Theory · Computer Science 2024-03-25 Xu Gan , Chongwen Huang , Zhaohui Yang , Xiaoming Chen , Jiguang He , Zhaoyang Zhang , Chau Yuen , Yong Liang Guan , Mérouane Debbah

Diffusive molecular communication (DMC) is envisioned as a promising approach to help realize healthcare applications within bounded biological environments. In this paper, a DMC system within a biological spherical environment is…

Signal Processing · Electrical Eng. & Systems 2018-11-15 Hamidreza Arjmandi , Mohammad Zoofaghari , Adam Noel

This paper presents a framework that enables characterizing analytically the spectral efficiency achievable by D2D (device-to-device) communication integrated with a cellular network. This framework is based on a stochastic geometry…

Information Theory · Computer Science 2016-11-17 Geordie George , Ratheesh K. Mungara , Angel Lozano

We provide a fundamental treatment of the molecular communication channel wherein "inscribed matter" is transmitted across a spatial gap to provide reliable signaling between a sender and receiver. Inscribed matter is defined as an ensemble…

Emerging Technologies · Computer Science 2020-09-22 Christopher Rose , Ismat Saira Mian
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