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Background: Mining gene modules from genomic data is an important step to detect gene members of pathways or other relations such as protein-protein interactions. In this work, we explore the plausibility of detecting gene modules by…

Machine Learning · Computer Science 2017-05-12 YaoGong Zhang , YingJie Xu , Xin Fan , YuXiang Hong , Jiahui Liu , ZhiCheng He , YaLou Huang , MaoQiang Xie

Nonnegative matrix factorization (NMF) is a popular data embedding technique. Given a nonnegative data matrix $X$, it aims at finding two lower dimensional matrices, $W$ and $H$, such that $X\approx WH$, where the factors $W$ and $H$ are…

Machine Learning · Computer Science 2026-02-06 Olivier Vu Thanh , Nicolas Gillis

In nonnegative matrix factorization (NMF), minimum-volume-constrained NMF is a widely used framework for identifying the solution of NMF by making basis vectors as similar as possible. This typically induces sparsity in the coefficient…

Machine Learning · Computer Science 2026-03-26 Qianqian Qi , Zhongming Chen , Peter G. M. van der Heijden

Non-negative matrix factorization (NMF) is a popular unsupervised learning approach widely used in image clustering. However, in real-world clustering scenarios, most existing NMF methods are highly sensitive to noise corruption and are…

Computer Vision and Pattern Recognition · Computer Science 2025-05-01 Jingjing Liu , Nian Wu , Xianchao Xiu , Jianhua Zhang

Nonnegative Matrix Factorization (NMF) is a widely used technique for data representation. Inspired by the expressive power of deep learning, several NMF variants equipped with deep architectures have been proposed. However, these methods…

Machine Learning · Computer Science 2017-11-21 Yuning Qiu , Guoxu Zhou , Kan Xie

Symmetric nonnegative matrix factorization (SymNMF) has important applications in data analytics problems such as document clustering, community detection and image segmentation. In this paper, we propose a novel nonconvex variable…

Optimization and Control · Mathematics 2017-03-27 Songtao Lu , Mingyi Hong , Zhengdao Wang

Estimating audio and musical signals from single channel mixtures often, if not always, involves a transformation of the mixture signal to the time-frequency (T-F) domain in which a masking operation takes place. Masking is realized as an…

Sound · Computer Science 2017-06-16 Stylianos Ioannis Mimilakis , Gerald Schuller

Complex-valued processing has brought deep learning-based speech enhancement and signal extraction to a new level. Typically, the process is based on a time-frequency (TF) mask which is applied to a noisy spectrogram, while complex masks…

Audio and Speech Processing · Electrical Eng. & Systems 2022-02-02 Hendrik Schröter , Alberto N. Escalante-B. , Tobias Rosenkranz , Andreas Maier

We present Vibrato Nonnegative Tensor Factorization, an algorithm for single-channel unsupervised audio source separation with an application to separating instrumental or vocal sources with nonstationary pitch from music recordings. Our…

Sound · Computer Science 2016-06-02 Elliot Creager , Noah D. Stein , Roland Badeau , Philippe Depalle

Collaborative filtering generates recommendations by exploiting user-item similarities based on rating data, which often contains numerous unrated items. To predict scores for unrated items, matrix factorization techniques such as…

Statistical Mechanics · Physics 2025-07-30 Yukino Terui , Yuka Inoue , Yohei Hamakawa , Kosuke Tatsumura , Kazue Kudo

While there has been much recent progress using deep learning techniques to separate speech and music audio signals, these systems typically require large collections of isolated sources during the training process. When extending audio…

Sound · Computer Science 2020-09-01 Fatemeh Pishdadian , Gordon Wichern , Jonathan Le Roux

Brain tumor classification from magnetic resonance imaging, which is also known as MRI, plays a sensitive role in computer-assisted diagnosis systems. In recent years, deep learning models have achieved high classification accuracy.…

Computer Vision and Pattern Recognition · Computer Science 2026-04-21 Hiba Adil Al-kharsan , Róbert Rajkó

Analyzing large X-ray diffraction (XRD) datasets is a key step in high-throughput mapping of the compositional phase diagrams of combinatorial materials libraries. Optimizing and automating this task can help accelerate the process of…

Nonnegative matrix factorization (NMF) is a widely used tool for learning parts-based, low-dimensional representations of nonnegative data, with applications in vision, text, and bioinformatics. In clustering applications, orthogonal NMF…

Machine Learning · Computer Science 2025-12-10 Manh Nguyen , Daniel Pimentel-Alarcón

Non-negative matrix factorization (NMF) is a natural model of admixture and is widely used in science and engineering. A plethora of algorithms have been developed to tackle NMF, but due to the non-convex nature of the problem, there is…

Machine Learning · Computer Science 2015-07-09 Rong Ge , James Zou

Non-negative Matrix Factorization (NMF) asks to decompose a (entry-wise) non-negative matrix into the product of two smaller-sized nonnegative matrices, which has been shown intractable in general. In order to overcome this issue, the…

Data Structures and Algorithms · Computer Science 2019-07-15 Zhihuai Chen , Yinan Li , Xiaoming Sun , Pei Yuan , Jialin Zhang

Topic models often fail to capture low-prevalence, domain-critical themes, so-called minority topics, such as mental health themes in online comments. While some existing methods can incorporate domain knowledge, such as expected topical…

Machine Learning · Computer Science 2025-05-23 Seyedeh Fatemeh Ebrahimi , Jaakko Peltonen

In this work we perform some mathematical analysis on non-negative matrix factorizations (NMF) and apply NMF to some imaging and inverse problems. We will propose a sparse low-rank approximation of big positive data and images in terms of…

Optimization and Control · Mathematics 2015-04-24 Yat Tin Chow , Kazufumi Ito , Jun Zou

As the amount of text data continues to grow, topic modeling is serving an important role in understanding the content hidden by the overwhelming quantity of documents. One popular topic modeling approach is non-negative matrix…

Information Retrieval · Computer Science 2022-08-23 Maksim E. Eren , Nick Solovyev , Manish Bhattarai , Kim Rasmussen , Charles Nicholas , Boian S. Alexandrov

A robust algorithm for non-negative matrix factorization (NMF) is presented in this paper with the purpose of dealing with large-scale data, where the separability assumption is satisfied. In particular, we modify the Linear Programming…

Machine Learning · Statistics 2014-01-10 Jason Gejie Liu , Shuchin Aeron