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Cell biomechanics involve a great number of complex phenomena that are fundamental to the evolution of life itself and other associated processes, ranging from the very early stages of embryo-genesis to the maintenance of damaged structures…

Computer Vision and Pattern Recognition · Computer Science 2025-09-09 Juan Olalla-Pombo , Alberto Badías , Miguel Ángel Sanz-Gómez , José María Benítez , Francisco Javier Montáns

We present a selective review of statistical modeling of dynamic networks. We focus on models with latent variables, specifically, the latent space models and the latent class models (or stochastic blockmodels), which investigate both the…

Methodology · Statistics 2018-05-31 Bomin Kim , Kevin Lee , Lingzhou Xue , Xiaoyue Niu

This article investigates the effect of explicitly adding auxiliary algebraic trajectory information to neural networks for dynamical systems. We draw inspiration from the field of differential-algebraic equations and differential equations…

Machine Learning · Computer Science 2024-03-13 Tue Boesen , Eldad Haber , Uri Michael Ascher

Dynamical models underpin our ability to understand and predict the behavior of natural systems. Whether dynamical models are developed from first-principles derivations or from observational data, they are predicated on our choice of state…

Machine Learning · Computer Science 2023-01-11 Daniel Floryan , Michael D. Graham

A lubrication model describes the dynamics of a thin layer of fluid spreading over a solid substrate. But to make forecasts we need to supply correct initial conditions to the model. Remarkably, the initial fluid thickness is not the…

chao-dyn · Physics 2007-05-23 S. A. Suslov , A. J. Roberts

Active systems across scales, ranging from molecular machines to human crowds, are usually modeled as assemblies of self-propelled particles driven by internally generated forces. However, these models often assume memoryless dynamics and…

Statistical Mechanics · Physics 2025-12-10 Marc Besse , Raphaël Voituriez

In computer simulation of the learning process is usually assumed that all elements of the training material are assimilated equally durable. But in practice, the knowledge, which a student uses in its operations, are remembered much…

Computers and Society · Computer Science 2013-12-20 Robert V Mayer

Mean-field theory is a powerful tool for studying large neural networks. However, when the system is composed of a few neurons, macroscopic differences between the mean-field approximation and the real behavior of the network can arise.…

Neurons and Cognition · Quantitative Biology 2016-09-28 Diego Fasoli , Anna Cattani , Stefano Panzeri

Among the versatile forms of dynamical patterns of activity exhibited by the brain, oscillations are one of the most salient and extensively studied, yet are still far from being well understood. In this paper, we provide various structural…

Systems and Control · Electrical Eng. & Systems 2021-08-12 Erfan Nozari , Robert Planas , Jorge Cortes

The nervous system displays a variety of rhythms in both waking and sleep. These rhythms have been closely associated with different behavioral and cognitive states, but it is still unknown how the nervous system makes use of these rhythms…

Dynamical Systems · Mathematics 2007-05-23 Nancy Kopell

Hopfield models, originally developed to study memory retrieval in neural networks, have become versatile tools for modeling diverse biological systems in which function emerges from collective dynamics. In this review, we provide a…

Biological Physics · Physics 2025-06-17 Maria Yampolskaya , Pankaj Mehta

Human learning is a complex phenomenon requiring flexibility to adapt existing brain function and precision in selecting new neurophysiological activities to drive desired behavior. These two attributes -- flexibility and selection -- must…

Neurons and Cognition · Quantitative Biology 2013-06-28 Danielle S. Bassett , Nicholas F. Wymbs , Mason A. Porter , Peter J. Mucha , Jean M. Carlson , Scott T. Grafton

The brain is an intricately structured organ responsible for the rich emergent dynamics that support the complex cognitive functions we enjoy as humans. With around $10^{11}$ neurons and $10^{15}$ synapses, understanding how the human brain…

Neurons and Cognition · Quantitative Biology 2019-02-12 Jason Z. Kim , Danielle S. Bassett

The aim of this work is to establish the existence of invariant manifolds in complex systems. Considering trajectory curves integral of multiple time scales dynamical systems of dimension two and three (predator-prey models, neuronal…

Dynamical Systems · Mathematics 2014-08-19 Jean-Marc Ginoux , Bruno Rossetto

Spatiotemporal flows of neural activity, such as traveling waves, have been observed throughout the brain since the earliest recordings; yet there is still little consensus on their functional role. Recent experiments and models have linked…

Neurons and Cognition · Quantitative Biology 2026-02-03 T. Anderson Keller , Lyle Muller , Terrence J. Sejnowski , Max Welling

In this paper, a model for understanding the effects of selection using systems- level computational approaches is introduced. A number of concepts and principles essential for understanding the motivation for constructing the model will be…

Populations and Evolution · Quantitative Biology 2009-03-04 Bradly Alicea

The present article introduces a reference framework for discussing resilience of computational systems. Rather than a property that may or may not be exhibited by a system, resilience is interpreted here as the emerging result of a dynamic…

Systems and Control · Computer Science 2015-04-13 Vincenzo De Florio

This study investigates the influence of initial conditions on the evolution and properties of linear quasi-normal modes (QNMs). Using a toy model in which the quasi-normal mode can be unambiguously identified, we highlight an aspect of…

General Relativity and Quantum Cosmology · Physics 2024-12-05 Ameya Chavda , Macarena Lagos , Lam Hui

When viewed at a certain coarse grain, the brain seems a relatively small dynamical system composed by a few dozen interacting areas, performing a number of stereotypical behaviors. It is known that, even relatively small dynamical systems…

Neurons and Cognition · Quantitative Biology 2015-06-26 Dante R. Chialvo

This study presents a dynamic Bayesian network framework that facilitates intuitive gradual edge changes. We use two conditional dynamics to model the edge addition and deletion, and edge selection separately. Unlike previous research that…

Methodology · Statistics 2025-05-08 Lupe S. H. Chan , Amanda M. Y. Chu , Mike K. P. So