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Bayesian models of cognition have gained considerable traction in computational neuroscience and psychiatry. Their scopes are now expected to expand rapidly to artificial intelligence, providing general inference frameworks to support…

Neural and Evolutionary Computing · Computer Science 2025-08-07 Nicolas Legrand , Lilian Weber , Peter Thestrup Waade , Anna Hedvig Møller Daugaard , Mojtaba Khodadadi , Nace Mikuš , Chris Mathys

Deep learning, which is especially formidable in handling big data, has achieved great success in various fields, including bioinformatics. With the advances of the big data era in biology, it is foreseeable that deep learning will become…

Quantitative Methods · Quantitative Biology 2019-03-04 Yu Li , Chao Huang , Lizhong Ding , Zhongxiao Li , Yijie Pan , Xin Gao

Advances in bioinformatics are primarily due to new algorithms for processing diverse biological data sources. While sophisticated alignment algorithms have been pivotal in analyzing biological sequences, deep learning has substantially…

We describe how Python can be leveraged to streamline the curation, modelling and dissemination of drug discovery data as well as the development of innovative, freely available tools for the related scientific community. We look at various…

Other Computer Science · Computer Science 2016-07-05 Michał Nowotka , George Papadatos , Mark Davies , Nathan Dedman , Anne Hersey

In this article, we first give an introduction to artificial intelligence and its applications in biology and medicine in Section 1. Deep learning methods are then described in Section 2. We narrow down the focus of the study on textual…

Artificial Intelligence · Computer Science 2022-03-08 Milad Moradi , Matthias Samwald

The ubiquity of technology in our daily lives and the economic stability of the technology sector in recent years, especially in areas with a computer science footing, has led to an increase in computer science enrollment in many parts of…

Computers and Society · Computer Science 2014-05-13 Zubair Nabi

High-level programming languages such as Python are increasingly used to provide intuitive interfaces to libraries written in lower-level languages and for assembling applications from various components. This migration towards…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-21 Yadu Babuji , Anna Woodard , Zhuozhao Li , Daniel S. Katz , Ben Clifford , Rohan Kumar , Lukasz Lacinski , Ryan Chard , Justin M. Wozniak , Ian Foster , Michael Wilde , Kyle Chard

Advancements in artificial intelligence (AI) have transformed many scientific fields, with microbiology and microbiome research now experiencing significant breakthroughs through machine learning applications. This review provides a…

Quantitative Methods · Quantitative Biology 2025-12-19 Xu-Wen Wang , Tong Wang , Yang-Yu Liu

Computer-aided design (CAD) has become a critical element in the creation of nanopatterned structures and devices. In particular, with the increased adoption of easy-to-learn programming languages like Python there has been a significant…

Superconductivity · Physics 2023-08-17 A. N. McCaughan , A. M. Tait , S. M. Buckley , D. M. Oh , J. T. Chiles , J. M. Shainline , S. W. Nam

Many data science students and practitioners don't see the value in making time to learn and adopt good coding practices as long as the code "works". However, code standards are an important part of modern data science practice, and they…

Computation · Statistics 2023-08-29 Randall Pruim , Maria-Cristiana Gîrjău , Nicholas J. Horton

Biological foundation models (BioFMs), pretrained on large-scale biological sequences, have recently shown strong potential in providing meaningful representations for diverse downstream bioinformatics tasks. However, such models often rely…

Machine Learning · Computer Science 2026-02-10 Yifan Wu , Jiyue Jiang , Xichen Ye , Yiqi Wang , Chang Zhou , Yitao Xu , Jiayang Chen , He Hu , Weizhong Zhang , Cheng Jin , Jiao Yuan , Yu Li

Delivering effective data analytics is of crucial importance to the interpretation of the multitude of biological datasets currently generated by an ever increasing number of high throughput techniques. Logic programming has much to offer…

Logic in Computer Science · Computer Science 2019-09-19 Nicos Angelopoulos , Jan Wielemaker

Neuromorphic computing has come to refer to a variety of brain-inspired computers, devices, and models that contrast the pervasive von Neumann computer architecture. This biologically inspired approach has created highly connected synthetic…

Neural and Evolutionary Computing · Computer Science 2017-05-22 Catherine D. Schuman , Thomas E. Potok , Robert M. Patton , J. Douglas Birdwell , Mark E. Dean , Garrett S. Rose , James S. Plank

The application of psychophysiologicy in human-computer interaction is a growing field with significant potential for future smart personalised systems. Working in this emerging field requires comprehension of an array of physiological…

Human-Computer Interaction · Computer Science 2016-09-26 Kristian Lukander

The integration of bioinformatics predictions and experimental validation plays a pivotal role in advancing biological research, from understanding molecular mechanisms to developing therapeutic strategies. Bioinformatics tools and methods…

The continuous development of artificial intelligence has a profound impact on biomedicine and other fields, providing new research ideas and technical methods. Brain-inspired computing is an important intersection between multimodal…

Artificial Intelligence · Computer Science 2026-02-03 Bihui Yu , Sibo Zhang , Lili Zhou , Jingxuan Wei , Linzhuang Sun , Liping Bu

Python is a multi-paradigm programming language that fully supports object-oriented (OO) programming. The language allows writing code in a non-procedural imperative manner, using procedures, using classes, or in a functional style. To…

Software Engineering · Computer Science 2022-09-07 Robert Dyer , Jigyasa Chauhan

Motivated by a desire to improve on the current state of the art in genetic programming, and aided by recent progress in understanding the computational aspects of evolutionary systems, we describe a process that creates a set of generic…

Neural and Evolutionary Computing · Computer Science 2019-02-19 David Landaeta

Data science plays a critical role in biomedical research, but it requires professionals with expertise in coding and medical data analysis. Large language models (LLMs) have shown great potential in supporting medical tasks and performing…

Artificial Intelligence · Computer Science 2025-04-10 Zifeng Wang , Benjamin Danek , Ziwei Yang , Zheng Chen , Jimeng Sun

Machine learning methods are increasingly employed to address challenges faced by biologists. One area that will greatly benefit from this cross-pollination is the problem of biological sequence design, which has massive potential for…

Quantitative Methods · Quantitative Biology 2020-10-26 Sam Sinai , Eric D Kelsic
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