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We model and simulate the stepping dynamics of the kinesin motor including electric and mechanical forces, environmental noise, and the complicated potentials produced by tracking and neighboring protofilaments. Our dynamical model supports…

Biological Physics · Physics 2016-05-02 Alexander I Nesterov , Gennady P Berman , Mónica F Ramírez

Micro/nano-scale propulsion has attracted considerable recent attention due to its promise for biomedical applications such as targeted drug delivery. In this paper, we report on a new experimental design and theoretical modelling of…

Fluid Dynamics · Physics 2011-09-09 On Shun Pak , Wei Gao , Joseph Wang , Eric Lauga

In systems possessing spatial or dynamical symmetry breaking, Brownian motion combined with symmetric external input signals, deterministic or random, alike, can assist directed motion of particles at the submicron scales. In such cases,…

Statistical Mechanics · Physics 2009-06-05 Peter Hanggi , Fabio Marchesoni

Molecular electronics break-junction experiments are widely used to investigate fundamental physics and chemistry at the nanoscale. Reproducibility in these experiments relies on measuring conductance on thousands of freshly formed…

Chemical Physics · Physics 2024-01-29 Leopoldo Mejía , Pilar Cossio , Ignacio Franco

Synthetic active matter systems, such as active colloids, often have complex interactions, which can be of hydrodynamic, chemical or electrostatic origin and cannot be computed from first principles. Here, we use Stochastic Force Inference…

Soft Condensed Matter · Physics 2025-09-26 Jérôme Hem , Alexis Poncet , Pierre Ronceray , Daiki Nishiguchi , Vincent Démery

Janus particles with the ability to move phoretically in self-generated chemical concentration gradients are model systems for active matter. Their motion typically consists of straight paths with rotational diffusion being the dominant…

Soft Condensed Matter · Physics 2018-04-18 Maciej Lisicki , Shang Yik Reigh , Eric Lauga

The motion of active colloids is generally achieved through their anisotropy, as exemplified by Janus colloids. Recently, there was a growing interest in the propulsion of isotropic colloids, which requires some local symmetry breaking.…

Soft Condensed Matter · Physics 2021-09-08 Jeanne Decayeux , Vincent Dahirel , Marie Jardat , Pierre Illien

Studying systems where many individual bodies in motion interact with one another is a complex and interesting area. Simple mechanisms that may be determined for biological, chemical, or physical reasons can lead to astonishingly complex…

Quantitative Methods · Quantitative Biology 2023-01-03 Cameron McNamee , Renee Reijo Pera

We study a system of self-propelled particles which interact with their neighbors via alignment and repulsion. The particle velocities result from self-propulsion and repulsion by close neighbors. The direction of self-propulsion is…

Mathematical Physics · Physics 2014-04-22 Pierre Degond , Giacomo Dimarco , Thi Bich Ngoc Mac , Nan Wang

Catalytic swimmers have attracted much attention as alternatives to biological systems for examining collective microscopic dynamics and the response to physico-chemical signals. Yet, understanding and predicting even the most fundamental…

Soft Condensed Matter · Physics 2017-02-22 Sebastien Michelin , Eric Lauga

This study introduces the integration of hybrid magnetic and electric actuation mechanisms to achieve advanced motion capabilities for Janus particle (JP) microrobots. We demonstrate enhanced in-plane motion control through versatile…

Robotics · Computer Science 2025-03-27 Ido Rachbuch , Sinwook Park , Yuval Katz , Touvia Miloh , Gilad Yossifon

In the presence of a chemically active particle, a nearby chemically inert particle can respond to a concentration gradient and move by diffusiophoresis. The nature of the motion is studied for two cases: first, a fixed reactive sphere and…

Soft Condensed Matter · Physics 2018-06-25 Shang Yik Reigh , Prabha Chuphal , Snigdha Thakur , Raymond Kapral

The collective dynamics of $N$ weakly coupled processive molecular motors are considered theoretically. We show, using a discrete lattice model, that the velocity-force curves strongly depend on the effective dynamic interactions between…

Subcellular Processes · Quantitative Biology 2009-11-11 O. Campas , Y. Kafri , K. B. Zeldovich , J. Casademunt , J. -F. Joanny

A molecular motor is made of either a single macromolecule or a macromolecular complex. Just like their macroscopic counterparts, molecular motors "transduce" input energy into mechanical work. All the nano-motors considered here operate…

Biological Physics · Physics 2013-07-18 Debashish Chowdhury

Emergent phenomena share the fascinating property of not being obvious consequences of the design of the system in which they appear. This characteristic is no less relevant when attempting to simulate such phenomena, given that the outcome…

Soft Condensed Matter · Physics 2014-11-26 D. C. Rapaport

We describe Janus, a massively parallel FPGA-based computer optimized for the simulation of spin glasses, theoretical models for the behavior of glassy materials. FPGAs (as compared to GPUs or many-core processors) provide a complementary…

Janus phoretic colloids (JPs) self-propel as a result of self-generated chemical gradients and exhibit spontaneous nontrivial dynamics within phoretic suspensions, on length scales much larger than the microscopic swimmer size. Such…

Fluid Dynamics · Physics 2021-11-29 Tullio Traverso , Sebastien Michelin

A trapping mechanism for propelled colloidal particles based on an inhomogeneous drive is presented and studied by means of computer simulations. In experiments this method can be realized using photophoretic Janus particles driven by a…

Computational Physics · Physics 2015-07-21 Martin P. Magiera , Lothar Brendel

A simple model for simulating flows of active suspensions is investigated. The approach is based on dissipative particle dynamics. While the model is potentially applicable to a wide range of self-propelled particle systems, the specific…

Fluid Dynamics · Physics 2015-10-08 Denis F. Hinz , Alexander Panchenko , Tae-Yeon Kim , Eliot Fried

Neuromorphic computing exploits the dynamical analogy between many physical systems and neuron biophysics. Superconductor systems, in particular, are excellent candidates for neuromorphic devices due to their capacity to operate in great…

Neurons and Cognition · Quantitative Biology 2022-05-24 Dimitrios Chalkiadakis , Johanne Hizanidis
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