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Most animals possess the ability to actuate a vast diversity of movements, ostensibly constrained only by morphology and physics. In practice, however, a frequent assumption in behavioral science is that most of an animal's activities can…

Quantitative Methods · Quantitative Biology 2014-08-13 Gordon J. Berman , Daniel M. Choi , William Bialek , Joshua W. Shaevitz

Animals that travel together in groups display a variety of fascinating motion patterns thought to be the result of delicate local interactions among group members. Although the most informative way of investigating and interpreting…

Biological Physics · Physics 2010-10-27 Mate Nagy , Zsuzsa Akos , Dora Biro , Tamas Vicsek

Here we present the first method for tracking each leg of a fruit fly behaving spontaneously upon a trackball, in real time. Legs were tracked with infrared-fluorescent dye invisible to the fly, and compatible with two-photon microscopy and…

Neurons and Cognition · Quantitative Biology 2015-06-11 Jamey Kain , Chris Stokes , Quentin Gaudry , Xiangzhi Song , James Foley , Rachel Wilson , Benjamin de Bivort

Aging affects almost all aspects of an organism -- its morphology, its physiology, its behavior. Isolating which biological mechanisms are regulating these changes, however, has proven difficult, potentially due to our inability to…

Quantitative Methods · Quantitative Biology 2022-05-04 Katherine E. Overman , Daniel M. Choi , Kawai Leung , Joshua W. Shaevitz , Gordon J. Berman

Consider a flock of birds that fly interacting between them. The interactions are modelled through a hierarchical system in which each bird, at each time step, adjusts its own velocity according to his past velocity and a weighted mean of…

Probability · Mathematics 2009-12-24 Federico Dalmao , Ernesto Mordecki

Handedness in humans - better performance using either the left or right hand - is personally familiar, moderately heritable, and regulated by many genes, including those involved in general body symmetry. But behavioral handedness, i.e.…

Neurons and Cognition · Quantitative Biology 2016-07-13 Sean Buchanan , Jamey Kain , Benjamin de Bivort

Collective motion of bird flocks can be explained via the hypothesis of many wrongs, and/or, a structured leadership mechanism. In pigeons, previous studies have shown that there is a well-defined hierarchical structure and certain specific…

Physics and Society · Physics 2015-06-03 Xiao-Ke Xu , Graciano Dieck Kattas , Michael Small

We present a general framework for modeling a wide selection of flocking scenarios under free boundary conditions. Several variants have been considered - including examples for the widely observed behavior of hierarchically interacting…

Physics and Society · Physics 2019-04-23 Yongnan Jia , Tamas Vicsek

Animal behavior spans many timescales, from short, seconds-scale actions to circadian rhythms over many hours to life-long changes during aging. Most quantitative behavior studies have focused on short-timescale behaviors such as locomotion…

Biological Physics · Physics 2023-09-11 Grace C. McKenzie-Smith , Scott W. Wolf , Julien F. Ayroles , Joshua W. Shaevitz

Although extensive behavioral changes often exist between closely related animal species, our understanding of the genetic basis underlying the evolution of behavior has remained limited. Here, we propose a new framework to study behavioral…

Populations and Evolution · Quantitative Biology 2020-07-21 Damián G. Hernández , Catalina Rivera , Jessica Cande , Baohua Zhou , David L. Stern , Gordon J. Berman

Social foraging is a widespread form of animal foraging in which groups of individuals coordinate their decisions to exploit resources in the environment. Animals show a variety of social structures from egalitarian to hierarchical. In this…

Populations and Evolution · Quantitative Biology 2025-03-05 Lisa Blum Moyse , Ahmed El Hady

Animal behavior unfolds across many timescales, from fast movement patterns to slow changes in internal states such as hunger, arousal, and circadian phase. These slow variables are rarely measured directly and must instead be inferred from…

Quantitative Methods · Quantitative Biology 2026-05-26 Rajpreet Kaur , Kanishk Jain , Gordon J. Berman

Our understanding of the neural basis of locomotor behavior can be informed by careful quantification of animal movement. Classical descriptions of legged locomotion have defined discrete locomotor gaits, characterized by distinct patterns…

Neurons and Cognition · Quantitative Biology 2022-03-02 Ana I. Gonçalves , Jacob A. Zavatone-Veth , Megan R. Carey , Damon A. Clark

Behavioural phenotyping of Drosophila is an important means in biological and medical research to identify genetic, pathologic or psychologic impact on animal behaviour.

Computer Vision and Pattern Recognition · Computer Science 2019-08-05 Ziping Jiang , Paul L. Chazot , M. Emre Celebi , Danny Crookes , Richard Jiang

While most processes in biology are highly deterministic, stochastic mechanisms are sometimes used to increase cellular diversity, such as in the specification of sensory receptors. In the human and Drosophila eye, photoreceptors sensitive…

Cell Behavior · Quantitative Biology 2019-03-06 Haleh Ebadi , Michael Perry , Keith Short , Konstantin Klemm , Claude Desplan , Peter F. Stadler , Anita Mehta

Many natural and engineered complex networks have intricate mesoscopic organization, e.g., the clustering of the constituent nodes into several communities or modules. Often, such modularity is manifested at several different hierarchical…

Physics and Society · Physics 2015-05-30 Sitabhra Sinha , Swarup Poria

In complex systems, groups of interacting objects may form prevalent and persistent spatiotemporal patterns, which we refer to as motifs. These motifs can exhibit features that reveal how individual objects interact with one another.…

Biological Physics · Physics 2025-12-12 Ying Chen Lim , Rakesh Das , Tetsuya Hiraiwa , N. Duane Loh

In this paper we propose the Hatching-Box, a novel imaging and analysis system to automatically monitor and quantify the developmental behavior of Drosophila in standard rearing vials and during regular rearing routines, rendering explicit…

Computer Vision and Pattern Recognition · Computer Science 2026-01-16 Julian Bigge , Maite Ogueta , Luis Garcia , Benjamin Risse

Swarming is a conspicuous behavioural trait observed in bird flocks, fish shoals, insect swarms and mammal herds. It is thought to improve collective awareness and offer protection from predators. Many current models involve the hypothesis…

Quantitative Methods · Quantitative Biology 2015-06-22 Daniel J. G. Pearce , A. M. Miller , George Rowlands , Matthew S. Turner

Collective animal movements produce spectacular natural phenomena that arise from simple local interactions among group members. Flocks of homing pigeons, Columba livia, provide a useful model for the study of collective motion and decision…

Biological Physics · Physics 2016-10-26 Andrea Flack , Zsuzsa Ákos , Máté Nagy , Tamás Vicsek , Dora Biro
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