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A hallmark of bacteria is their so-called "run-and-tumble" motion, consisting of a sequence of linear directed "runs" and random rotations that constantly alternate due to biochemical feedback. It plays a crucial role in the ability of…

Soft Condensed Matter · Physics 2024-02-21 Gordei Anchutkin , Viktor Holubec , Frank Cichos

Organisms often swim through density stratified fluids. In this Letter, we investigate the dynamics of small active particles swimming in density gradients and report theoretical evidence of taxis as a result of density stratification…

Soft Condensed Matter · Physics 2023-08-02 Vaseem A. Shaik , Gwynn J. Elfring

Living systems, from single cells to higher vertebrates, receive a continuous stream of non-stationary inputs that they sense, e.g., via cell surface receptors or sensory organs. Integrating these time-varying, multi-sensory, and often…

Other Quantitative Biology · Quantitative Biology 2024-04-17 Daniel Koch , Akhilesh Nandan , Gayathri Ramesan , Aneta Koseska

We derive the long-time dynamics of a tracer immersed in a one-dimensional active bath. In contrast to previous studies, we find that the damping and noise correlations possess long-time tails with exponents that depend on the tracer…

Soft Condensed Matter · Physics 2022-07-26 Omer Granek , Yariv Kafri , Julien Tailleur

The effect of crowding on the run-and-tumble dynamics of swimmers such as bacteria is studied using a discrete lattice model of mutually excluding particles that move with constant velocity along a direction that is randomized at a rate…

Soft Condensed Matter · Physics 2015-06-16 Rodrigo Soto , Ramin Golestanian

Peritrichous bacteria synchronize and bundle their flagella to actively swim while disruption of the bundle leads to tumbling. It is still not known whether the number of flagella represents an evolutionary adaptation towards optimizing…

Biological Physics · Physics 2020-04-21 Javad Najafi , M. Reza Shaebani , Thomas John , Florian Altegoer , Gert Bange , Christian Wagner

The aim of this paper is to demonstrate the efficacy of using Contrastive Random Walk as a curiosity method to achieve faster convergence to the optimal policy.Contrastive Random Walk defines the transition matrix of a random walk with the…

Machine Learning · Computer Science 2022-04-26 Zixuan Pan , Zihao Wei , Yidong Huang , Aditya Gupta

Quadruped animals seamlessly transition between gaits as they change locomotion speeds. While the most widely accepted explanation for gait transitions is energy efficiency, there is no clear consensus on the determining factor, nor on the…

Robotics · Computer Science 2023-06-16 Milad Shafiee , Guillaume Bellegarda , Auke Ijspeert

We study a system of self-propelled disks that perform run-and-tumble motion, where particles can adopt more than one internal state. One of those internal states can be transmitted to another particle if the particle carrying this state…

Biological Physics · Physics 2019-12-30 Fernando Peruani , Gustavo Sibona

Feedback flashing ratchets are thermal rectifiers that use information on the state of the system to operate the switching on and off of a periodic potential. They can induce directed transport even with symmetric potentials thanks to the…

Statistical Mechanics · Physics 2008-05-27 M. Feito , F. J. Cao

Feedback loops between population dynamics of individuals and their ecological environment are ubiquitously found in nature, and have shown profound effects on the resulting eco-evolutionary dynamics. Incorporating linear environmental…

Physics and Society · Physics 2020-07-01 Xin Wang , Zhiming Zheng , Feng Fu

Active particles such as swimming bacteria or self-propelled colloids are known to spontaneously organize into fascinating large-scale dynamic structures. The emergence of these collective states from the motility pattern of the individual…

Soft Condensed Matter · Physics 2019-11-20 Hamid Karan , Gerardo E. Pradillo , Petia M. Vlahovska

A flashing ratchet transports diffusive particles using a time-dependent, asymmetric potential. Particle speed is predicted to increase when a feedback algorithm based on particle positions is used. We have experimentally realized such a…

Statistical Mechanics · Physics 2008-11-26 Benjamin J. Lopez , Nathan J. Kuwada , Erin M. Craig , Brian R. Long , Heiner Linke

How to recognise whether an observed person walks or runs? We consider a dynamic environment where observations (e.g. the posture of a person) are caused by different dynamic processes (walking or running) which are active one at a time and…

Neurons and Cognition · Quantitative Biology 2012-11-06 Sebastian Bitzer , Izzet B. Yildiz , Stefan J. Kiebel

Interest in biologically inspired alternatives to backpropagation is driven by the desire to both advance connections between deep learning and neuroscience and address backpropagation's shortcomings on tasks such as online, continual…

Neural and Evolutionary Computing · Computer Science 2020-06-18 Jack Lindsey , Ashok Litwin-Kumar

We numerically examine the transport of an assembly of active run-and-tumble disks interacting with a traveling wave substrate. We show that as a function of substrate strength, wave speed, disk activity, and disk density, a variety of…

Soft Condensed Matter · Physics 2017-01-25 Cs. Sándor , A. Libál , C. Reichhardt , C. J. Olson Reichhardt

The transient behavior of an ecosystem with N random interacting species in the presence of a multiplicative noise is analyzed. The multiplicative noise mimics the interaction with the environment. We investigate different asymptotic…

Statistical Mechanics · Physics 2009-11-10 B. Spagnolo , D. Valenti , A. Fiasconaro

The bacterium E.Coli swims in a zig-zag manner, in a series of straight runs and tumbles occurring alternately, with the run-durations dependent on the local spatial gradient of chemo-attractants/repellants. This enables the organism to…

Cell Behavior · Quantitative Biology 2008-12-31 Melissa Reneaux , Manoj Gopalakrishnan

The molecular network in an organism consists of transcription/translation regulation, protein-protein interactions/modifications and a metabolic network, together forming a system that allows the cell to respond sensibly to the multiple…

Molecular Networks · Quantitative Biology 2007-05-23 Sandeep Krishna , Anna M. C. Andersson , Szabolcs Semsey , Kim Sneppen

A sudden change in dynamics produces large errors leading to increases in muscle co-contraction and feedback gains during early adaptation. We previously proposed that internal model uncertainty drives these changes, whereby the…

Neurons and Cognition · Quantitative Biology 2023-12-13 Sae Franklin , David W. Franklin