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Objective: Automatic text summarization tools can help users in the biomedical domain to access information efficiently from a large volume of scientific literature and other sources of text documents. In this paper, we propose a…

Information Retrieval · Computer Science 2018-11-26 Milad Moradi , Nasser Ghadiri

In recent years, many methods have been developed to identify important portions of text documents. Summarization tools can utilize these methods to extract summaries from large volumes of textual information. However, to identify concepts…

Computation and Language · Computer Science 2019-03-08 Milad Moradi

Automatic text summarization methods generate a shorter version of the input text to assist the reader in gaining a quick yet informative gist. Existing text summarization methods generally focus on a single aspect of text when selecting…

Information Retrieval · Computer Science 2021-02-22 Ensieh Davoodijam , Nasser Ghadiri , Maryam Lotfi Shahreza , Fabio Rinaldi

Text summarization in medicine can help doctors for reducing the time to access important information from countless documents. The paper offers a supervised extractive summarization method based on conditional generative adversarial…

Computation and Language · Computer Science 2021-10-25 Seyed Vahid Moravvej , Abdolreza Mirzaei , Mehran Safayani

In recent years, summarizers that incorporate domain knowledge into the process of text summarization have outperformed generic methods, especially for summarization of biomedical texts. However, construction and maintenance of domain…

Computation and Language · Computer Science 2019-08-23 Milad Moradi , Matthias Samwald

Different from general documents, it is recognised that the ease with which people can understand a biomedical text is eminently varied, owing to the highly technical nature of biomedical documents and the variance of readers' domain…

Computation and Language · Computer Science 2023-05-02 Zheheng Luo , Qianqian Xie , Sophia Ananiadou

This chapter gives an overview of recent advances in the field of biomedical text summarization. Different types of challenges are introduced, and methods are discussed concerning the type of challenge that they address. Biomedical…

Computation and Language · Computer Science 2019-08-08 Milad Moradi , Nasser Ghadiri

In the era of clinical information explosion, a good strategy for clinical text summarization is helpful to improve the clinical workflow. The ideal summarization strategy can preserve important information in the informative but less…

Computation and Language · Computer Science 2020-03-03 Wei-Hung Weng , Yu-An Chung , Schrasing Tong

Can language models read biomedical texts and explain the biomedical mechanisms discussed? In this work we introduce a biomedical mechanism summarization task. Biomedical studies often investigate the mechanisms behind how one entity (e.g.,…

Computation and Language · Computer Science 2023-01-13 Mohaddeseh Bastan , Nishant Shankar , Mihai Surdeanu , Niranjan Balasubramanian

The technology of automatic document summarization is maturing and may provide a solution to the information overload problem. Nowadays, document summarization plays an important role in information retrieval. With a large volume of…

Information Retrieval · Computer Science 2012-04-10 Mohsen Pourvali , Mohammad Saniee Abadeh

We propose a summarization approach for scientific articles which takes advantage of citation-context and the document discourse model. While citations have been previously used in generating scientific summaries, they lack the related…

Computation and Language · Computer Science 2017-04-24 Arman Cohan , Nazli Goharian

Automatic text summarization tools have a great impact on many fields, such as medicine, law, and scientific research in general. As information overload increases, automatic summaries allow handling the growing volume of documents, usually…

Machine Learning · Computer Science 2019-06-28 Augusto Villa-Monte , Laura Lanzarini , Aurelio F. Bariviera , José A. Olivas

Abstracts derived from biomedical literature possess distinct domain-specific characteristics, including specialised writing styles and biomedical terminologies, which necessitate a deep understanding of the related literature. As a result,…

Computation and Language · Computer Science 2023-10-25 Chen Tang , Shun Wang , Tomas Goldsack , Chenghua Lin

Overall, the two main contributions of this work include the application of sentence simplification to association extraction as described above, and the use of distributional semantics for concept extraction. The proposed work on concept…

Computation and Language · Computer Science 2011-09-13 Siddhartha Jonnalagadda

Automatic evaluation metrics have been facilitating the rapid development of automatic summarization methods by providing instant and fair assessments of the quality of summaries. Most metrics have been developed for the general domain,…

Computation and Language · Computer Science 2023-03-21 Hongyi Yuan , Yaoyun Zhang , Fei Huang , Songfang Huang

This paper proposes a medical text summarization method based on LongFormer, aimed at addressing the challenges faced by existing models when processing long medical texts. Traditional summarization methods are often limited by short-term…

Computation and Language · Computer Science 2025-03-11 Dan Sun , Jacky He , Hanlu Zhang , Zhen Qi , Hongye Zheng , Xiaokai Wang

Previous approaches for automatic lay summarisation are exclusively reliant on the source article that, given it is written for a technical audience (e.g., researchers), is unlikely to explicitly define all technical concepts or state all…

Computation and Language · Computer Science 2023-10-25 Tomas Goldsack , Zhihao Zhang , Chen Tang , Carolina Scarton , Chenghua Lin

The exponential growth of biomedical texts such as biomedical literature and electronic health records (EHRs), poses a significant challenge for clinicians and researchers to access clinical information efficiently. To tackle this…

Computation and Language · Computer Science 2023-07-17 Qianqian Xie , Zheheng Luo , Benyou Wang , Sophia Ananiadou

Clinical trials are central to medical progress because they help improve understanding of human health and the healthcare system. They play a key role in discovering new ways to detect, prevent, or treat diseases, and it is essential that…

Computation and Language · Computer Science 2025-10-16 Surya Tejaswi Yerramsetty , Almas Fathimah

For many NLP applications, such as question answering and summarisation, the goal is to select the best solution from a large space of candidates to meet a particular user's needs. To address the lack of user-specific training data, we…

Computation and Language · Computer Science 2020-09-15 Edwin Simpson , Yang Gao , Iryna Gurevych
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