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Most graph kernels are an instance of the class of $\mathcal{R}$-Convolution kernels, which measure the similarity of objects by comparing their substructures. Despite their empirical success, most graph kernels use a naive aggregation of…

Machine Learning · Computer Science 2019-10-31 Matteo Togninalli , Elisabetta Ghisu , Felipe Llinares-López , Bastian Rieck , Karsten Borgwardt

We study potential biases of popular cluster quality metrics, such as conductance or modularity. We propose a method that uses both stochastic and preferential attachment block models construction to generate networks with preset community…

Physics and Society · Physics 2025-07-08 Martí Renedo-Mirambell , Argimiro Arratia

Existing approaches remain largely constrained by traditional distance metrics, limiting their effectiveness in handling random data. In this work, we introduce the first k-means variant in the literature that operates within a…

Clustering under pairwise constraints is an important knowledge discovery tool that enables the learning of appropriate kernels or distance metrics to improve clustering performance. These pairwise constraints, which come in the form of…

Machine Learning · Computer Science 2022-03-24 Benedikt Boecking , Vincent Jeanselme , Artur Dubrawski

For graph learning tasks, many existing methods utilize a message-passing mechanism where vertex features are updated iteratively by aggregation of neighbor information. This strategy provides an efficient means for graph features…

Machine Learning · Computer Science 2021-11-01 Jianming Huang , Zhongxi Fang , Hiroyuki Kasai

We generalize finite-sample bounds for convex clustering to the setting where affinity weights appearing in the objective correspond to a general connected graph. These bounds and their analysis lead to a better understanding of clustering…

Machine Learning · Statistics 2026-05-26 Sam Rosen , Jason Xu

Multilayer graphs are appealing mathematical tools for modeling multiple types of relationship in the data. In this paper, we aim at analyzing multilayer graphs by properly combining the information provided by individual layers, while…

Machine Learning · Computer Science 2020-10-30 Mireille El Gheche , Pascal Frossard

In recent years, networks with higher-order interactions have emerged as a powerful tool to model complex systems. Comparing these higher-order systems remains however a challenge. Traditional similarity measures designed for pairwise…

Physics and Society · Physics 2026-02-24 Cosimo Agostinelli , Marco Mancastroppa , Alain Barrat

Graph spectral techniques for measuring graph similarity, or for learning the cluster number, require kernel smoothing. The choice of kernel function and bandwidth are typically chosen in an ad-hoc manner and heavily affect the resulting…

Machine Learning · Statistics 2019-12-20 Diego Granziol , Robin Ru , Stefan Zohren , Xiaowen Dong , Michael Osborne , Stephen Roberts

It is widely accepted in the mode connectivity literature that when two neural networks are trained similarly on the same data, they are connected by a path through parameter space over which test set accuracy is maintained. Under some…

Machine Learning · Computer Science 2023-01-24 Jeevesh Juneja , Rachit Bansal , Kyunghyun Cho , João Sedoc , Naomi Saphra

Centrality metrics are a popular tool in Network Science to identify important nodes within a graph. We introduce the Potential Gain as a centrality measure that unifies many walk-based centrality metrics in graphs and captures the notion…

Social and Information Networks · Computer Science 2020-03-16 Pasquale De Meo , Mark Levene , Fabrizio Messina , Alessandro Provetti

Local clustering aims to find a compact cluster near the given starting instances. This work focuses on graph local clustering, which has broad applications beyond graphs because of the internal connectivities within various modalities.…

Social and Information Networks · Computer Science 2024-12-05 Zihao Li , Dongqi Fu , Hengyu Liu , Jingrui He

Distance-based clustering and classification are widely used in various fields to group mixed numeric and categorical data. In many algorithms, a predefined distance measurement is used to cluster data points based on their dissimilarity.…

Machine Learning · Computer Science 2024-10-14 Jesse S. Ghashti , John R. J. Thompson

Spectral clustering is one of the most prominent clustering approaches. The distance-based similarity is the most widely used method for spectral clustering. However, people have already noticed that this is not suitable for multi-scale…

Machine Learning · Computer Science 2020-09-11 Hengrui Wang , Yubo Zhang , Mingzhi Chen , Tong Yang

Many methods have been developed for data clustering, such as k-means, expectation maximization and algorithms based on graph theory. In this latter case, graphs are generally constructed by taking into account the Euclidian distance as a…

Data Analysis, Statistics and Probability · Physics 2011-01-27 Francisco A. Rodrigues , Guilherme Ferraz de Arruda , Luciano da Fontoura Costa

Predictions are often probabilities; e.g., a prediction could be for precipitation tomorrow, but with only a 30% chance. Given such probabilistic predictions together with the actual outcomes, "reliability diagrams" help detect and diagnose…

Statistics Theory · Mathematics 2022-11-15 Imanol Arrieta-Ibarra , Paman Gujral , Jonathan Tannen , Mark Tygert , Cherie Xu

In this paper, we propose a family of graph partition similarity measures that take the topology of the graph into account. These graph-aware measures are alternatives to using set partition similarity measures that are not specifically…

Machine Learning · Computer Science 2021-02-17 Valérie Poulin , François Théberge

K-Means clustering algorithm is one of the most commonly used clustering algorithms because of its simplicity and efficiency. K-Means clustering algorithm based on Euclidean distance only pays attention to the linear distance between…

Machine Learning · Computer Science 2022-06-13 Yiqun Zhang , Houbiao Li

Core-satellite graphs (sometimes referred to as generalized friendship graphs) are an interesting class of graphs that generalize many well known types of graphs. In this paper we show that two popular clustering measures, the average…

Social and Information Networks · Computer Science 2015-11-27 Ernesto Estrada , Michele Benzi

The choice of good distances and similarity measures between objects is important for many machine learning methods. Therefore, many metric learning algorithms have been developed in recent years, mainly for Euclidean data in order to…

Machine Learning · Computer Science 2022-12-23 Yacouba Kaloga , Pierre Borgnat , Amaury Habrard