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Recent studies have explored graph-based approaches to retrieval-augmented generation, leveraging structured or semi-structured information -- such as entities and their relations extracted from documents -- to enhance retrieval. However,…

Computation and Language · Computer Science 2025-07-24 Zhili Shen , Chenxin Diao , Pascual Merita , Pavlos Vougiouklis , Jeff Z. Pan

Graph foundation models have recently attracted significant attention due to its strong generalizability. Although existing methods resort to language models to learn unified semantic representations across domains, they disregard the…

Machine Learning · Computer Science 2025-10-17 Yao Cheng , Yige Zhao , Jianxiang Yu , Xiang Li

Directed graphs naturally model systems with asymmetric, ordered relationships, essential to applications in biology, transportation, social networks, and visual understanding. Generating such graphs enables tasks such as simulation, data…

Machine Learning · Computer Science 2026-02-20 Alba Carballo-Castro , Manuel Madeira , Yiming Qin , Dorina Thanou , Pascal Frossard

Recently, Graph Neural Networks (GNNs) have gained popularity in a variety of real-world scenarios. Despite the great success, the architecture design of GNNs heavily relies on manual labor. Thus, automated graph neural network (AutoGNN)…

Machine Learning · Computer Science 2021-12-03 Zhili Wang , Shimin Di , Lei Chen

Advancing research in the emerging field of deep graph learning requires new tools to support tensor computation over graphs. In this paper, we present the design principles and implementation of Deep Graph Library (DGL). DGL distills the…

Graphs are widely adopted tools for encoding information. Generally, they are applied to disparate research fields where data needs to be represented in terms of local and spatial connections. In this context, a structure for ditigal image…

Image and Video Processing · Electrical Eng. & Systems 2019-12-23 Mario Manzo

The Open Research Knowledge Graph (ORKG) provides machine-actionable access to scholarly literature that habitually is written in prose. Following the FAIR principles, the ORKG makes traditional, human-coded knowledge findable, accessible,…

Digital Libraries · Computer Science 2020-06-25 Mila Runnwerth , Markus Stocker , Sören Auer

Federated graph learning is an emerging field with significant practical challenges. While algorithms have been proposed to improve the accuracy of training graph neural networks, such as node classification on federated graphs, the system…

Machine Learning · Computer Science 2025-09-04 Yuhang Yao , Yuan Li , Xinyi Fan , Junhao Li , Kay Liu , Weizhao Jin , Yu Yang , Srivatsan Ravi , Philip S. Yu , Carlee Joe-Wong

The problem of accurately measuring the similarity between graphs is at the core of many applications in a variety of disciplines. Graph kernels have recently emerged as a promising approach to this problem. There are now many kernels, each…

We propose an approach to learning with graph-structured data in the problem domain of graph classification. In particular, we present a novel type of readout operation to aggregate node features into a graph-level representation. To this…

Machine Learning · Computer Science 2021-05-18 Christoph D. Hofer , Florian Graf , Bastian Rieck , Marc Niethammer , Roland Kwitt

Estimating the structure of directed acyclic graphs (DAGs) of features (variables) plays a vital role in revealing the latent data generation process and providing causal insights in various applications. Although there have been many…

Machine Learning · Computer Science 2024-03-06 Shaohua Fan , Shuyang Zhang , Xiao Wang , Chuan Shi

RNA 3D architectures are stabilized by sophisticated networks of (non-canonical) base pair interactions, which can be conveniently encoded as multi-relational graphs and efficiently exploited by graph theoretical approaches and recent…

Quantitative Methods · Quantitative Biology 2022-06-03 Vincent Mallet , Carlos Oliver , Jonathan Broadbent , William L. Hamilton , Jérôme Waldispühl

Many researchers have used tag information to improve the performance of recommendation techniques in recommender systems. Examining the tags of users will help to get their interests and leads to more accuracy in the recommendations. Since…

Information Retrieval · Computer Science 2023-10-03 Zeinab Shokrzadeh , Mohammad-Reza Feizi-Derakhshi , Mohammad-Ali Balafar , Jamshid Bagherzadeh-Mohasefi

Integrated Gradients (IG) is a common explainability technique to address the black-box problem of neural networks. Integrated gradients assumes continuous data. Graphs are discrete structures making IG ill-suited to graphs. In this work,…

Machine Learning · Computer Science 2025-09-10 Lachlan Simpson , Kyle Millar , Adriel Cheng , Cheng-Chew Lim , Hong Gunn Chew

Node classification is one of the hottest tasks in graph analysis. Though existing studies have explored various node representations in directed and undirected graphs, they have overlooked the distinctions of their capabilities to capture…

Machine Learning · Computer Science 2023-12-07 Seiji Maekawa , Yuya Sasaki , Makoto Onizuka

In order to evaluate, compare, and tune graph algorithms, experiments on well designed benchmark sets have to be performed. Together with the goal of reproducibility of experimental results, this creates a demand for a public archive to…

Learning directed acyclic graph (DAG) that describes the causality of observed data is a very challenging but important task. Due to the limited quantity and quality of observed data, and non-identifiability of causal graph, it is almost…

Machine Learning · Computer Science 2022-11-23 Dezhi Yang , Guoxian Yu , Jun Wang , Zhengtian Wu , Maozu Guo

Graph representation plays an important role in the field of financial risk control, where the relationship among users can be constructed in a graph manner. In practical scenarios, the relationships between nodes in risk control tasks are…

Machine Learning · Computer Science 2023-03-08 Jiafu Wu , Mufeng Yao , Dong Wu , Mingmin Chi , Baokun Wang , Ruofan Wu , Xin Fu , Changhua Meng , Weiqiang Wang

Knowledge graph reasoning in the fully-inductive setting, where both entities and relations at test time are unseen during training, remains an open challenge. In this work, we introduce GraphOracle, a novel framework that achieves robust…

Machine Learning · Computer Science 2025-12-30 Enjun Du , Siyi Liu , Yongqi Zhang

Graph Neural Networks (GNNs) have achieved remarkable success in graph-based learning by propagating information among neighbor nodes via predefined aggregation mechanisms. However, such fixed schemes often suffer from two key limitations.…

Computation and Language · Computer Science 2025-10-21 Minghao Guo , Xi Zhu , Haochen Xue , Chong Zhang , Shuhang Lin , Jingyuan Huang , Ziyi Ye , Yongfeng Zhang