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Over the past few years new physics methods and algorithms as well as the latest supercomputers have enabled the study of the QCD thermodynamic phase transition using lattice gauge theory numerical simulations with unprecedented control…
One of the major challenges in realizing a strongly interacting lattice gas using Rydberg states is the occurrence of avalanche loss processes. As these are directly proportional to the total Rydberg fraction, the commonly suggested…
We consider quantum nonlinear many-body systems with dissipation described within the Caldeira-Leggett model, i.e., by a nonlocal action in the path integral for the density matrix. Approximate classical-like formulas for thermodynamic…
We develop a theory describing density profile of the semi-flexible polymers absorbed onto a planar surface. The theoretical analysis consists of two parts. As a first part, we calculate a density profile of the adsorbed polymers by…
A new consistent analysis of the renormalized proton--neutron quasiparticle random phase approximation based on the simultaneous recalculation of the one--body density matrix and the pairing tensor has been used to study the double beta…
From molecular, cellular, to ecological systems, the modeling of biological processes often stands on the assumption that fast components immediately reach the equilibrium at each moment (quasi-steady state) and only slow components govern…
We present an extension of the pair coupled cluster doubles (p-CCD) method to quasiparticles and apply it to the attractive pairing Hamiltonian. Near the transition point where number symmetry gets spontaneously broken, the proposed…
For the exploration of the phase diagram of QCD, effective Polyakov loop theories derived from lattice QCD provide a valuable tool in the heavy quark mass regime. In practice, the evaluation of these theories is complicated by the…
In this paper, explicit method of constructing approximations (the Triangle Entropy Method) is developed for nonequilibrium problems. This method enables one to treat any complicated nonlinear functionals that fit best the physics of a…
Relativistic plasma with radiation at thermodynamic equilibrium is ageneral system of interest in astrophysics and high energy physics. We develop a new self-consistent quasi-particle model for such a system to take account of collective…
In recent years, simulation methods based on the scaling of atomic potential functions, such as quasi-coarse-grained dynamics and coarse-grained dynamics, have shown promising results for modeling crystalline systems at multiple scales.…
We study a stochastic system of $N$ interacting particles which models bimolecular chemical reaction-diffusion. In this model, each particle $i$ carries two attributes: the spatial location $X_t^i\in \mathbb{T}^d$, and the type $\Xi_t^i\in…
We study the quasi-stationary evolution of systems where an energetic confinement is unable to completely retain their constituents. It is performed an extensive numerical study of a gas whose dynamics is driven by binary encounters and its…
The mean spherical approximation (MSA) is a closure relation for pair correlation functions (two-point functions) in statistical physics. It can be applied to a wide range of systems, is computationally fairly inexpensive, and when properly…
We describe a fast implementation of the quasi-centroid molecular dynamics (QCMD) method in which the quasi-centroid potential of mean force is approximated as a separable correction to the classical interaction potential. This correction…
There are many mathematical models of biochemical cell signaling pathways that contain a large number of elements (species and reactions). This is sometimes a big issue for identifying critical model elements and describing the model…
We introduce a lattice Boltzmann for simulating an immiscible binary fluid mixture. Our collision rules are derived from a macroscopic thermodynamic description of the fluid in a way motivated by the Cahn-Hilliard approach to…
The jamming and percolation for two generalized models of random sequential adsorption (RSA) of linear $k$-mers (particles occupying $k$ adjacent sites) on a square lattice are studied by means of Monte Carlo simulation. The classical…
Convenient variational formula for collective diffusion of many particles adsorbed at lattices of arbitrary geometry is formulated. The approach allows to find the expressions for the diffusion coefficient for any value of the system's…
Soft matter materials and polymers are widely used in the controlled delivery of drugs. Simulation and modeling provide insight at the atomic scale enabling a level of control unavailable to experiments. We present a workflow protocol for…