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Graph foundation models (GFMs), pretrained on massive graph data, have transformed graph machine learning by supporting general-purpose reasoning across diverse graph tasks and domains. Existing GFMs pretrained with fixed-hop subgraph…

Machine Learning · Computer Science 2026-05-12 Haokun Liu , Zezhong Ding , Xike Xie

Gaussian Graphical Models (GGMs) are popular tools for studying network structures. However, many modern applications such as gene network discovery and social interactions analysis often involve high-dimensional noisy data with outliers or…

Machine Learning · Statistics 2015-10-30 Eunho Yang , Aurélie C. Lozano

We propose a geometric extension of restricted Boltzmann machines (RBMs) by allowing weights to take values in abstract groups such as \( \mathrm{GL}_n(\mathbb{R}) \), \( \mathrm{SU}(2) \), or even infinite-dimensional operator groups. This…

Machine Learning · Computer Science 2025-09-16 Jean-Pierre Magnot

Memory units have been widely used to enrich the capabilities of deep networks on capturing long-term dependencies in reasoning and prediction tasks, but little investigation exists on deep generative models (DGMs) which are good at…

Machine Learning · Computer Science 2016-05-31 Chongxuan Li , Jun Zhu , Bo Zhang

We show that a collection of Gaussian mixture models (GMMs) in $R^{n}$ can be optimally classified using $O(n)$ neurons in a neural network with two hidden layers (deep neural network), whereas in contrast, a neural network with a single…

Machine Learning · Computer Science 2019-02-18 Shirin Jalali , Carl Nuzman , Iraj Saniee

This paper presents a machine learning-based framework for topology optimization of self-supporting structures, specifically tailored for additive manufacturing (AM). By employing a graph neural network (GNN) that acts as a neural field…

Computational Engineering, Finance, and Science · Computer Science 2025-08-27 Alireza Tabarraei , Saquib Ahmad Bhuiyan

Graph neural networks (GNNs) excel at predictive tasks on graph-structured data but often lack the ability to incorporate symbolic domain knowledge and perform general reasoning. Relational Bayesian Networks (RBNs), in contrast, enable…

Artificial Intelligence · Computer Science 2025-07-30 Raffaele Pojer , Andrea Passerini , Kim G. Larsen , Manfred Jaeger

Modeling and generating graphs is fundamental for studying networks in biology, engineering, and social sciences. However, modeling complex distributions over graphs and then efficiently sampling from these distributions is challenging due…

Machine Learning · Computer Science 2018-06-26 Jiaxuan You , Rex Ying , Xiang Ren , William L. Hamilton , Jure Leskovec

Graph neural networks (GNNs) are powerful machine learning models for various graph learning tasks. Recently, the limitations of the expressive power of various GNN models have been revealed. For example, GNNs cannot distinguish some…

Machine Learning · Computer Science 2021-01-19 Ryoma Sato , Makoto Yamada , Hisashi Kashima

Estimation of the large $Q$-matrix in Cognitive Diagnosis Models (CDMs) with many items and latent attributes from observational data has been a huge challenge due to its high computational cost. Borrowing ideas from deep learning…

Methodology · Statistics 2021-11-30 Chengcheng Li , Chenchen Ma , Gongjun Xu

Most accurate recommender systems are black-box models, hiding the reasoning behind their recommendations. Yet explanations have been shown to increase the user's trust in the system in addition to providing other benefits such as…

Machine Learning · Statistics 2016-06-24 Behnoush Abdollahi , Olfa Nasraoui

Restricted Boltzmann machine (RBM) provide a general framework for modeling physical systems, but their behavior is dependent on hyperparameters such as the learning rate, the number of hidden nodes and the form of the threshold function.…

Computational Physics · Physics 2020-04-28 David Yevick , Roger Melko

Laplacian regularized stratified models (LRSM) are models that utilize the explicit or implicit network structure of the sub-problems as defined by the categorical features called strata (e.g., age, region, time, forecast horizon, etc.),…

Machine Learning · Statistics 2023-05-05 Ziheng Cheng , Junzi Zhang , Akshay Agrawal , Stephen Boyd

In this paper, we implement an information-theoretic approach to travel behaviour analysis by introducing a generative modelling framework to identify informative latent characteristics in travel decision making. It involves developing a…

Machine Learning · Computer Science 2018-09-18 Melvin Wong , Bilal Farooq

Recurrent Neural Network (RNN) and its variations such as Long Short-Term Memory (LSTM) and Gated Recurrent Unit (GRU), have become standard building blocks for learning online data of sequential nature in many research areas, including…

Computation and Language · Computer Science 2020-05-12 Enmao Diao , Jie Ding , Vahid Tarokh

Restricted Boltzmann machines (RBMs) have demonstrated considerable success as variational quantum states; however, their representational power remains incompletely understood. In this work, we present an analytical proof that RBMs can…

Quantum Physics · Physics 2025-05-29 Yuan-Hang Zhang , Zhian Jia , Yu-Chun Wu , Guang-Can Guo

Understanding the representational power of Restricted Boltzmann Machines (RBMs) with multiple layers is an ill-understood problem and is an area of active research. Motivated from the approach of \emph{Inherent Structure formalism}…

Machine Learning · Statistics 2018-06-13 Abhishek Bansal , Abhinav Anand , Chiranjib Bhattacharyya

A major goal in genomics is to properly capture the complex dynamical behaviors of gene regulatory networks (GRNs). This includes inferring the complex interactions between genes, which can be used for a wide range of genomics analyses,…

Molecular Networks · Quantitative Biology 2023-01-18 Mohammad Alali , Mahdi Imani

Understanding the dynamics of a system is important in many scientific and engineering domains. This problem can be approached by learning state transition rules from observations using machine learning techniques. Such observed time-series…

Machine Learning · Computer Science 2022-12-08 Koji Watanabe , Katsumi Inoue

Three important properties of a classification machinery are: (i) the system preserves the core information of the input data; (ii) the training examples convey information about unseen data; and (iii) the system is able to treat…

Neural and Evolutionary Computing · Computer Science 2016-06-29 Raja Giryes , Guillermo Sapiro , Alex M. Bronstein