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Proteins play a critical role in carrying out biological functions, and their 3D structures are essential in determining their functions. Accurately predicting the conformation of protein side-chains given their backbones is important for…

Quantitative Methods · Quantitative Biology 2024-02-19 Yangtian Zhang , Zuobai Zhang , Bozitao Zhong , Sanchit Misra , Jian Tang

We introduce a novel kernel-based framework for learning differential equations and their solution maps that is efficient in data requirements, in terms of solution examples and amount of measurements from each example, and computational…

Machine Learning · Statistics 2025-04-07 Yasamin Jalalian , Juan Felipe Osorio Ramirez , Alexander Hsu , Bamdad Hosseini , Houman Owhadi

The increasing demand for larger and higher fidelity simulations has made Adaptive Mesh Refinement (AMR) and unstructured mesh techniques essential to focus compute effort and memory cost on just the areas of interest in the simulation…

Graphics · Computer Science 2025-01-23 Xuan Huang , Will Usher , Valerio Pascucci

Kernel density estimation is a popular method for estimating unseen probability distributions. However, the convergence of these classical estimators to the true density slows down in high dimensions. Moreover, they do not define meaningful…

Statistics Theory · Mathematics 2025-05-30 Jack Kendrick

Invariance to nuisance transformations is one of the desirable properties of effective representations. We consider transformations that form a \emph{group} and propose an approach based on kernel methods to derive local group invariant…

Machine Learning · Computer Science 2017-05-25 Anant Raj , Abhishek Kumar , Youssef Mroueh , P. Thomas Fletcher , Bernhard Schölkopf

Data depth is a statistical function that generalizes order and quantiles to the multivariate setting and beyond, with applications spanning over descriptive and visual statistics, anomaly detection, testing, etc. The celebrated halfspace…

Machine Learning · Statistics 2023-12-22 Arturo Castellanos , Pavlo Mozharovskyi , Florence d'Alché-Buc , Hicham Janati

Finding a suitable density function is essential for density-based clustering algorithms such as DBSCAN and DPC. A naive density corresponding to the indicator function of a unit $d$-dimensional Euclidean ball is commonly used in these…

Machine Learning · Computer Science 2021-10-15 Chao Zheng , Yingjie Chen , Chong Chen , Jianqiang Huang , Xian-Sheng Hua

State estimation is a key ingredient in most robotic systems. Often, state estimation is performed using some form of least squares minimization. Basically, all error minimization procedures that work on real-world data use robust kernels…

Robotics · Computer Science 2021-02-19 Nived Chebrolu , Thomas Läbe , Olga Vysotska , Jens Behley , Cyrill Stachniss

Designing free-form photonic devices is fundamentally challenging due to the vast number of possible geometries and the complex requirements of fabrication constraints. Traditional inverse-design approaches--whether driven by human…

Optics · Physics 2025-04-25 Dongjin Seo , Soobin Um , Sangbin Lee , Jong Chul Ye , Haejun Chung

This paper presents a kernel-based adaptive filter that is applied for the digital domain self-interference cancellation (SIC) in a transceiver operating in full-duplex (FD) mode. In FD, the benefit of simultaneous transmission and…

Signal Processing · Electrical Eng. & Systems 2022-07-13 M. Hossein Attar , Omid Taghizadeh , Kaxin Chang , Ramez Askar , Matthias Mehlhose , Slawomir Stanczak

Domain specific (dis-)similarity or proximity measures used e.g. in alignment algorithms of sequence data, are popular to analyze complex data objects and to cover domain specific data properties. Without an underlying vector space these…

Data Structures and Algorithms · Computer Science 2014-11-07 Andrej Gisbrecht , Frank-Michael Schleif

We aim at estimating in a non-parametric way the density $\pi$ of the stationary distribution of a $d$-dimensional stochastic differential equation $(X_t)_{t \in [0, T]}$, for $d \ge 2$, from the discrete observations of a finite sample…

Statistics Theory · Mathematics 2022-12-29 Chiara Amorino , Arnaud Gloter

We present a probabilistic framework for both (i) determining the initial settings of kernel adaptive filters (KAFs) and (ii) constructing fully-adaptive KAFs whereby in addition to weights and dictionaries, kernel parameters are learnt…

Machine Learning · Statistics 2017-07-21 Iván Castro , Cristóbal Silva , Felipe Tobar

We apply expansion methods to obtain an approximate expression in terms of elementary functions for the space and time dependence of wave packets in a dispersive medium. The specific application to pulses in a cold plasma is considered in…

Classical Physics · Physics 2009-10-30 Borge Nodland

This work presents a distributed algorithm for nonlinear adaptive learning. In particular, a set of nodes obtain measurements, sequentially one per time step, which are related via a nonlinear function; their goal is to collectively…

Information Theory · Computer Science 2016-02-09 Symeon Chouvardas , Moez Draief

Many algorithms for the computation of correspondences between deformable shapes rely on some variant of nearest neighbor matching in a descriptor space. Such are, for example, various point-wise correspondence recovery algorithms used as a…

Computer Vision and Pattern Recognition · Computer Science 2017-04-10 Matthias Vestner , Roee Litman , Emanuele Rodolà , Alex Bronstein , Daniel Cremers

We study triangulation schemes for the joint kernel of a diffusion process with uniformly continuous coefficients and an adapted, non-resonant Abelian process. The prototypical example of Abelian process to which our methods apply is given…

Probability · Mathematics 2007-11-20 Claudio Albanese

Background and Objectives: The mechanics of the nucleus depends on cellular structures and architecture, and impact a number of diseases. Nuclear mechanics is yet rather complex due to heterogeneous distribution of dense heterochromatin and…

Medical Physics · Physics 2023-09-29 Yue Mei , Xuan Feng , Yun Jin , Rongyao Kang , Xinyu Wang , Dongmei Zhao , Soham Ghosh , Corey P Neu , Stephane Avril

We derive the adjoint path-kernel method for computing parameter-gradients (linear responses) of SDEs. Its cost is almost independent of the number of parameters, and it works for non-hyperbolic systems with parameter-controlled…

Probability · Mathematics 2025-12-11 Angxiu Ni

The growing demand for edge computing and AI drives research into analog in-memory computing using memristors, which overcome data movement bottlenecks by computing directly within memory. However, device failures and variations critically…

Emerging Technologies · Computer Science 2025-07-16 Zhicheng Xu , Jiawei Liu , Sitao Huang , Zefan Li , Shengbo Wang , Bo Wen , Ruibin Mao , Mingrui Jiang , Giacomo Pedretti , Jim Ignowski , Kaibin Huang , Can Li