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Protein-surface interactions cause the desirable effect of controlled protein adsorption onto biodevices as well as the undesirable effect of protein fouling. The key to controlling protein-surface adsorptions is to identify and quantify…

Biological Physics · Physics 2010-10-14 Shannon Kian Zareh , Y. M. Wang

We study the steady state of a stochastic particle system on a two-dimensional lattice, with particle influx, diffusion and desorption, and the formation of a dimer when particles meet. Surface processes are thermally activated, with…

Statistical Mechanics · Physics 2015-05-30 A. Wolff , I. Lohmar , J. Krug , O. Biham

Wetting transitions have been predicted and observed to occur for various combinations of fluids and surfaces. This paper describes the origin of such transitions, for liquid films on solid surfaces, in terms of the gas-surface interaction…

Materials Science · Physics 2015-05-13 Silvina M. Gatica , Milton W. Cole

The transport of independent active Brownian particles within a two-dimensional narrow channel, modeled as an open-wedge, is studied both numerically and theoretically. We show that the active force tends to localize the particles near the…

Statistical Mechanics · Physics 2019-05-01 Lorenzo Caprini , Fabio Cecconi , Umberto Marini Bettolo Marconi

The effects of Brownian motion on particle interactions with heterogeneous collectors are evaluated by adding stochastic Brownian displacements to the particle trajectories and comparing those trajectories to those where Brownian motion is…

Soft Condensed Matter · Physics 2015-10-23 Marina Bendersky , Maria M. Santore , Jeffrey M. Davis

We reproduced the initial sticking probability of O$_{2}$/Al(111) by use of spin-polarized density functional theory and quantum dynamics calculations. We found a large activation barrier when the molecule is dissociatively adsorbed through…

Materials Science · Physics 2012-09-11 K. Shimizu , W. A. Diño , H. Kasai

We experimentally study a gas of $N = 8$ one-dimensional Brownian particles, each confined in a harmonic trap with identical stiffness. The stiffness switches simultaneously between two values at random Poissonian times. This collective…

Statistical Mechanics · Physics 2025-08-12 Marco Biroli , Sergio Ciliberto , Manas Kulkarni , Satya N. Majumdar , Artyom Petrosyan , Gregory Schehr

Recent work has highlighted roles for thermodynamic phase behavior in diverse cellular processes. Proteins and nucleic acids can phase separate into three-dimensional liquid droplets in the cytoplasm and nucleus and the plasma membrane of…

Biological Physics · Physics 2022-02-23 Mason Rouches , Sarah Veatch , Benjamin Machta

Biological adhesion is a critical mechanical function of complex organisms operating at multiple scales. At the cellular scale, cell-cell adhesion is remarkably tunable to enable both cohesion and malleability during development,…

Soft Condensed Matter · Physics 2022-03-07 Dimitri Kaurin , Pradeep K. Bal , Marino Arroyo

We present a systematic simulation campaign to investigate the pairwise interaction of two mobile, monodisperse particles submerged in a viscous fluid and subjected to monochromatic oscillating flows. To this end, we employ the immersed…

Fluid Dynamics · Physics 2024-03-08 Fabian Kleischmann , Paolo Luzzatto-Fegiz , Eckart Meiburg , Bernhard Vowinckel

The breakup dynamics of viscous liquid bridges on solid surfaces is studied experimentally. It is found that the dynamics bears similarities to the breakup of free liquid bridges in the viscous regime. Nevertheless, the dynamics is…

Fluid Dynamics · Physics 2024-08-06 Salar Farokhi , Peyman Rostami , Günter K. Auernhammer , Steffen Hardt

Wetting phenomena plays an interesting role in the technological development of materials. Recently, much attention has been directed to the study of magnetic solid films. To understand, theoretically, the effect of surface on wetting and…

Materials Science · Physics 2007-05-23 H. Ez-Zahraouy , A. Benyoussef , L. Bahmad

Switch-like motifs are among the basic building blocks of biochemical networks. A common motif that can serve as an ultrasensitive switch consists of two enzymes acting antagonistically on a substrate, one making and the other removing a…

Molecular Networks · Quantitative Biology 2023-05-31 Jeremy A. Owen , Pranay Talla , John W. Biddle , Jeremy Gunawardena

A binary mixture of particles interacting with spherically-symmetric potentials leading to microsegregation is studied by theory and molecular dynamics (MD) simulations. We consider spherical particles with equal diameters and volume…

Soft Condensed Matter · Physics 2020-11-20 O. Patsahan , M. Litniewski , A. Ciach

We investigate the particle trapping and scattering properties in a tight-binding network which consists of several subgraphs. The particle trapping condition is proved under which particles can be trapped in a subgraph without leaking.…

Quantum Physics · Physics 2010-05-20 L. Jin , Z. Song

Soft matter materials, such as polymers, membranes, proteins, are often electrically charged. This makes them water soluble, which is of great importance in technological application and a prerequisite for biological function. We discuss a…

Soft Condensed Matter · Physics 2007-05-23 H. Boroudjerdi , Y. -W. Kim , A. Naji , R. R. Netz , X. Schlagberger , A. Serr

A model of protein-ligand binding kinetics in which slow solvent dynamics results from hydrophobic drying transitions is investigated. Molecular dynamics simulations show that solvent in the receptor pocket can fluctuate between wet and dry…

Soft Condensed Matter · Physics 2013-09-09 Jagannath Mondal , Joseph A. Morrone , B. J. Berne

Transport phenomena in complex and dynamic microscopic environments are fundamentally shaped by hydrodynamic interactions. In particular, microparticle transport in porous media is governed by the delicate interplay between…

In this work we have characterized the phase behaviour and the dynamics of bidimensional mixtures of active and passive Brownian particles. We have evaluated state diagrams at several concentrations of the passive components finding that,…

Soft Condensed Matter · Physics 2025-11-12 Diego Rogel Rodriguez , Francisco Alarcon , Raul Martinez , Jorge Ramirez , Chantal Valeriani

An interesting aspect in the research of complex (dusty) plasmas is the experimental study of the interaction of micro-particles with the surrounding plasma for diagnostic purposes. Local electric fields can be determined from the behaviour…

Plasma Physics · Physics 2009-11-13 R. Basner , F. Sigeneger , D. Loffhagen , G. Schubert , H. Fehske , H. Kersten
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