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We study the dynamics of interacting agents from two distinct inter-mixed populations: One population includes active agents that follow a predetermined velocity field, while the second population contains exclusively passive agents, i.e.…

Numerical Analysis · Mathematics 2018-06-07 Matteo Colangeli , Adrian Muntean , Omar Richardson , Thoa Thieu

Diffusive molecular dynamics is a novel model for materials with atomistic resolution that can reach diffusive time scales. The main ideas of diffusive molecular dynamics are to first minimize an approximate variational Gaussian free energy…

Numerical Analysis · Mathematics 2015-06-09 Gideon Simpson , Mitchell Luskin , David J. Srolovitz

This article presents a multi-physics methodology for the numerical simulation of physical systems that involve the non-linear interaction of multi-phase reactive fluids and elastoplastic solids, inducing high strain-rates and high…

Computational Physics · Physics 2021-06-04 Tim Wallis , Philip T. Barton , Nikolaos Nikiforakis

We propose receivers for bistatic sensing and communication that exploit a tensor modeling of the received signals. We consider a hybrid scenario where the sensing link knows the transmitted data to estimate the target parameters while the…

Signal Processing · Electrical Eng. & Systems 2024-12-18 Walter da C. Freitas , Gerard Favier , Andre L. F. de Almeida

This paper proposes a control theoretic framework to model and analyze the self-organized pattern formation of molecular concentrations in biomolecular communication networks, emerging applications in synthetic biology. In biomolecular…

Molecular Networks · Quantitative Biology 2019-01-08 Yutaka Hori , Hiroki Miyazako , Soichiro Kumagai , Shinji Hara

We study two-way covert communication schemes, where information is transmitted by passively modulating a reflected signal back to the source. We consider optical systems, described by quantum bosonic channels. While broadband classical and…

Diffusion models have emerged as powerful generative frameworks by progressively adding noise to data through a forward process and then reversing this process to generate realistic samples. While these models have achieved strong…

Machine Learning · Computer Science 2025-03-04 Xingzhuo Guo , Yu Zhang , Baixu Chen , Haoran Xu , Jianmin Wang , Mingsheng Long

Active-passive multiagent systems consist of agents subject to inputs (active agents) and agents with no inputs (passive agents), where active and passive agent roles are considered to be interchangeable in order to capture a wide array of…

Systems and Control · Electrical Eng. & Systems 2020-10-07 Ehsan Arabi , Dimitra Panagou , Tansel Yucelen

Unlike vision and language data which usually has a unique format, molecules can naturally be characterized using different chemical formulations. One can view a molecule as a 2D graph or define it as a collection of atoms located in a 3D…

Machine Learning · Computer Science 2023-03-29 Shengjie Luo , Tianlang Chen , Yixian Xu , Shuxin Zheng , Tie-Yan Liu , Liwei Wang , Di He

With the maturation of differentiable physics, its role in various downstream applications: such as model predictive control, robotic design optimization, and neural PDE solvers, has become increasingly important. However, the derivative…

Robotics · Computer Science 2025-09-26 Xiaohan Ye , Kui Wu , Zherong Pan , Taku Komura

This paper presents a method for shaping the transmit pulse of a molecular signal such that the diffusion channel's response is a sharp pulse. The impulse response of a diffusion channel is typically characterised as having an infinitely…

Emerging Technologies · Computer Science 2016-11-17 Siyi Wang , Weisi Guo , Mark D. McDonnell

The real and imaginary parts of the susceptibility are fundamentally associated with the molecular dispersion and absorption, respectively. Measurement of the molecular dispersion has given insight into underlying molecular dynamics such as…

Chemical Physics · Physics 2019-01-15 Rachel Glenn

We study the absorbing state transition in particulate systems under spatially inhomogeneous driving using a modified random organization model. For smoothly varying driving the steady state results map onto the homogeneous absorbing state…

Soft Condensed Matter · Physics 2024-03-06 Bhanu Prasad Bhowmik , Christopher Ness

Flow through passive porous media is typically described in terms of a linear theory relating current fluxes and driving forces, in the presence of a prescribed heterogeneous permeability. However, many porous systems such as glacial…

Statistical Mechanics · Physics 2015-04-08 Samuel A. Ocko , L. Mahadevan

Traditional molecular communications via diffusion (MCvD) systems have used baseband modulation techniques by varying properties of molecular pulses such as the amplitude, the frequency of the transversal wave of the pulse, and the time…

Emerging Technologies · Computer Science 2016-11-17 Weisi Guo , Bin Li , Siyi Wang , Wei Liu

A non-equilibrium thermodynamics model able to analyze the combined effect of diffusion and adsorption in porous materials is proposed. The model considers the coupled dynamics of the diffusive phase, described by a diffusion type equation,…

Materials Science · Physics 2015-06-04 I. Santamaria-Holek , Z. J. Grzywna , J. M. Rubi

Chemical reactions inside cells are generally considered to happen within fixed-size compartments. Needless to say, cells and their compartments are highly dynamic. Thus, such stringent assumptions may not reflect biochemical reality, and…

Quantitative Methods · Quantitative Biology 2016-02-17 Atiyo Ghosh , Tatiana T. Marquez-Lago

The design of wireless communication receivers to enhance signal processing in complex and dynamic environments is going through a transformation by leveraging deep neural networks (DNNs). Traditional wireless receivers depend on…

Information Theory · Computer Science 2025-01-30 Shadman Rahman Doha , Ahmed Abdelhadi

The contact process is a stochastic process which exhibits a continuous, absorbing-state phase transition in the Directed Percolation (DP) universality class. In this work, we consider a contact process with a bias in conjunction with an…

Statistical Mechanics · Physics 2013-05-20 A. Costa , R. A. Blythe , M. R. Evans

Dynamical systems running on the top of complex networks has been extensively investigated for decades. But this topic still remains among the most relevant issues in complex network theory due to its range of applicability. The contact…

Physics and Society · Physics 2021-02-03 Angélica S. Mata