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Being able to measure time, whether directly or indirectly, is a significant advantage for an organism. It allows for the timely reaction to regular or predicted events, reducing the pressure for fast processing of sensory input. Thus,…

Other Quantitative Biology · Quantitative Biology 2019-06-19 Andrei D. Robu , Christoph Salge , Chrystopher L. Nehaniv , Daniel Polani

The interplay between circadian and reward function is well understood in animal models, and is of growing interest as an aetiological explanation in psychopathologies. Circadian modulation of reward function has been demonstrated in human…

Neurons and Cognition · Quantitative Biology 2018-12-12 Greg Murray , Catherine Orr , Jamie E. M. Byrne , Matthew E. Hughes , Susan L. Rossell , Sheri L. Johnson

We study the dynamics of a circadian oscillator model which was proposed by Tyson, Hong, Thron and Novak. This model indicates a molecular mechanism for the circadian rhythm in Drosophila. After giving a detailed study of the equilibria, we…

Dynamical Systems · Mathematics 2021-04-13 Shuang Chen , Jinqiao Duan , Ji Li

The study of synchronization in populations of coupled biological oscillators is fundamental to many areas of biology to include neuroscience, cardiac dynamics and circadian rhythms. Studying these systems may involve tracking the…

Quantitative Methods · Quantitative Biology 2017-01-18 Kevin M. Hannay , Daniel B. Forger , Victoria Booth

Many signalling functions in molecular biology require proteins bind to substrates such as DNA in response to environmental signals such as the simultaneous binding to a small molecule. Examples are repressor proteins which may transmit…

Biomolecules · Quantitative Biology 2009-11-10 Rhoda J. Hawkins , Thomas C. B. McLeish

Oscillations lie at the core of many biological processes, from the cell cycle, to circadian oscillations and developmental processes. Time-keeping mechanisms are essential to enable organisms to adapt to varying conditions in environmental…

Machine Learning · Statistics 2015-04-27 D Trejo , AJ Millar , G Sanguinetti

Intracellular transmission of information via chemical and transcriptional networks is thwarted by a physical limitation: the finite copy number of the constituent chemical species introduces unavoidable intrinsic noise. Here we provide a…

Molecular Networks · Quantitative Biology 2010-08-27 Andrew Mugler , Aleksandra M. Walczak , Chris H. Wiggins

Circadian oscillation provides selection advantages through synchronization to the daylight cycle. However, a reliable clock must be designed through two conflicting properties: entrainability to synchronize internal time with periodic…

Biological Physics · Physics 2013-12-23 Yoshihiko Hasegawa , Masanori Arita

Oscillations in nonequilibrium noisy systems are important physical phenomena. These oscillations can happen in autonomous biochemical oscillators such as circadian clocks. They can also manifest as subharmonic oscillations in periodically…

Statistical Mechanics · Physics 2019-12-25 Daniele De Martino , Andre C Barato

Experiments that compare rhythmic properties across different genetic alterations and entrainment conditions underlie some of the most important breakthroughs in circadian biology. A robust estimation of the rhythmic properties of the…

Quantitative Methods · Quantitative Biology 2021-07-30 Christoph Schmal , Gregor Mönke , Adrián E. Granada

Circadian rhythms are endogenous 24-hour oscillations that regulate physiology, metabolism, sleep-wake cycles, and cellular homeostasis. Drosophila melanogaster, a genetically tractable model organism, has played a foundational role in…

Molecular Networks · Quantitative Biology 2025-12-04 Yasmin Fatima , Md. Zubair Malik , Prashant Ankur Jain

Circadian rhythms are the cycles of our internal clock that play a key role in governing when we sleep and when we are active. A related concept is chronotype, which is a person's natural tendency toward activity at certain times of day and…

Computers and Society · Computer Science 2021-03-03 Albina Zavgorodniaia , Raj Shrestha , Juho Leinonen , Arto Hellas , John Edwards

Biological oscillators coordinate individual cellular components so that they function coherently and collectively. They are typically composed of multiple feedback loops, and period mismatch is unavoidable in biological implementations. We…

Biological Physics · Physics 2013-05-06 Yoshihiko Hasegawa , Masanori Arita

We derive a Hamiltonian for the external and internal dynamics of an electromagnetically bound, charged two-particle system in external electromagnetic and gravitational fields, including leading-order relativistic corrections. We apply…

Atomic Physics · Physics 2024-02-06 V. J. Martínez-Lahuerta , S. Eilers , T. E. Mehlstäubler , P. O. Schmidt , K. Hammerer

Biomedical signals carry signature rhythms of complex physiological processes that control our daily bodily activity. The properties of these rhythms indicate the nature of interaction dynamics among physiological processes that maintain a…

Machine Learning · Computer Science 2020-12-14 Yassin Khalifa , Danilo Mandic , Ervin Sejdić

Workhorse theories throughout all of physics derive effective Hamiltonians to describe slow time evolution, even though low-frequency modes are actually coupled to high-frequency modes. Such effective Hamiltonians are accurate because of…

Classical Physics · Physics 2017-01-25 Lukas Gilz , Eike P. Thesing , James R. Anglin

Objective: This study aimed to explore the associations between depression severity and wearable-measured circadian rhythms, accounting for seasonal impacts and quantifying seasonal changes in circadian rhythms.Materials and Methods: Data…

It has recently been observed that the occurrence of sudden cardiac death has a close statistical relationship with the time of day, viz., ventricular fibrillation is most likely to occur between 12 am-6 am, with 6 pm-12 am being the next…

Tissues and Organs · Quantitative Biology 2016-09-30 Pavithraa Seenivasan , Shakti N. Menon , S. Sridhar , Sitabhra Sinha

Circadian and other physiological rhythms play a key role in both normal homeostasis and disease processes. Such is the case of circadian and infradian seizure patterns observed in epilepsy. In this paper we explore a new implantable…

Humans, like almost all animals, are phase-locked to the diurnal cycle. Most of us sleep at night and are active through the day. Because we have evolved to function with this cycle, the circadian rhythm is deeply ingrained and even…

Physics and Society · Physics 2015-08-03 Talayeh Aledavood , Sune Lehmann , Jari Saramäki
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