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We propose new algorithms for computing triangular decompositions of polynomial systems incrementally. With respect to previous works, our improvements are based on a {\em weakened} notion of a polynomial GCD modulo a regular chain, which…

Symbolic Computation · Computer Science 2011-04-06 Changbo Chen , Marc Moreno Maza

Comparative analyses of phylogenetic trees typically require identical taxon sets, however, in practice, trees often include distinct but overlapping taxa. Pruning non-shared leaves discards phylogenetic signal, whereas tree completion can…

Populations and Evolution · Quantitative Biology 2026-04-28 Aleksandr Koshkarov , Nadia Tahiri

In this paper, we address the problem of enumerating all induced subtrees in an input k-degenerate graph, where an induced subtree is an acyclic and connected induced subgraph. A graph G = (V, E) is a k-degenerate graph if for any its…

Data Structures and Algorithms · Computer Science 2015-10-06 Kunihiro Wasa , Hiroki Arimura , Takeaki Uno

The currently most efficient algorithm for inference with a probabilistic network builds upon a triangulation of a network's graph. In this paper, we show that pre-processing can help in finding good triangulations forprobabilistic…

Artificial Intelligence · Computer Science 2013-01-14 Hans L. Bodlaender , Arie M. C. A. Koster , Frank van den Eijkhof , Linda C. van der Gaag

Over the past several years Bayesian networks have been applied to a wide variety of problems. A central problem in applying Bayesian networks is that of finding one or more of the most probable instantiations of a network. In this paper we…

Artificial Intelligence · Computer Science 2013-02-18 Sampath Srinivas , Pandurang Nayak

Enumerating all 3-manifold triangulations of a given size is a difficult but increasingly important problem in computational topology. A key difficulty for enumeration algorithms is that most combinatorial triangulations must be discarded…

Geometric Topology · Mathematics 2015-03-17 Benjamin A. Burton

The junction-tree representation provides an attractive structural property for organizing a decomposable graph. In this study, we present two novel stochastic algorithms, which we call the junction-tree expander and junction-tree collapser…

Statistics Theory · Mathematics 2021-02-16 Jimmy Olsson , Tetyana Pavlenko , Felix L. Rios

For an arbitrary undirected simple graph G with m edges, we give an algorithm with running time O(m^4 |L|^2) to generate the set L of all minimal edge dominating sets of G. For bipartite graphs we obtain a better result; we show that their…

Data Structures and Algorithms · Computer Science 2012-10-24 Petr A. Golovach , Pinar Heggernes , Dieter Kratsch , Yngve Villanger

An algorithm is presented that solves the Minimum Dominating Set problem exactly using polynomial space based on dynamic programming for a tree decomposition. A direct application of dynamic programming based on a tree decomposition would…

Data Structures and Algorithms · Computer Science 2017-11-29 Mahdi Belbasi , Martin Fürer

The \emph{Product Structure Theorem} for planar graphs (Dujmovi\'c et al.\ \emph{JACM}, \textbf{67}(4):22) states that any planar graph is contained in the strong product of a planar $3$-tree, a path, and a $3$-cycle. We give a simple…

Data Structures and Algorithms · Computer Science 2022-02-21 Prosenjit Bose , Pat Morin , Saeed Odak

We present a polynomial time algorithm to approximately scale tensors of any format to arbitrary prescribed marginals (whenever possible). This unifies and generalizes a sequence of past works on matrix, operator and tensor scaling. Our…

Data Structures and Algorithms · Computer Science 2020-03-10 Peter Bürgisser , Cole Franks , Ankit Garg , Rafael Oliveira , Michael Walter , Avi Wigderson

In low-dimensional topology, many important decision algorithms are based on normal surface enumeration, which is a form of vertex enumeration over a high-dimensional and highly degenerate polytope. Because this enumeration is subject to…

Geometric Topology · Mathematics 2013-02-18 Benjamin A. Burton , Melih Ozlen

Recent work has shown that not only decision trees (DTs) may not be interpretable but also proposed a polynomial-time algorithm for computing one PI-explanation of a DT. This paper shows that for a wide range of classifiers, globally…

Artificial Intelligence · Computer Science 2021-06-24 Xuanxiang Huang , Yacine Izza , Alexey Ignatiev , Joao Marques-Silva

Given a graph $G$, the maximal induced subgraphs problem asks to enumerate all maximal induced subgraphs of $G$ that belong to a certain hereditary graph class. While its optimization version, known as the minimum vertex deletion problem in…

Data Structures and Algorithms · Computer Science 2020-04-22 Yixin Cao

We describe a new algorithm to compute the geometric intersection number between two curves, given as edge vectors on an ideal triangulation. Most importantly, this algorithm runs in polynomial time in the bit-size of the two edge vectors.…

Geometric Topology · Mathematics 2016-05-12 Mark C. Bell , Richard C. H. Webb

Over the past decade, we witness an increasing amount of interest in the design of exact exponential-time and parameterized algorithms for problems in Graph Drawing. Unfortunately, we still lack knowledge of general methods to develop such…

Data Structures and Algorithms · Computer Science 2023-10-10 Siddharth Gupta , Guy Sa'ar , Meirav Zehavi

We present a novel algorithm for the minimum-depth elimination tree problem, which is equivalent to the optimal treedepth decomposition problem. Our algorithm makes use of two cheaply-computed lower bound functions to prune the search tree,…

Discrete Mathematics · Computer Science 2020-06-18 James Trimble

A tree-packing is a collection of spanning trees of a graph. It has been a useful tool for computing the minimum cut in static, dynamic, and distributed settings. In particular, [Thorup, Comb. 2007] used them to obtain his dynamic min-cut…

Data Structures and Algorithms · Computer Science 2024-12-05 Tijn de Vos , Aleksander B. G. Christiansen

Recombining trinomial trees are a workhorse for modeling discrete-event systems in option pricing, logistics, and feedback control. Because each node stores a state-dependent quantity, a depth-$D$ tree naively yields $\mathcal{O}(3^{D})$…

Data Structures and Algorithms · Computer Science 2025-10-06 Ethan Torres , Ramavarapu Sreenivas , Richard Sowers

We present an algorithmic contribution to improve the efficiency of robust trim-fitting in outlier affected geometric regression problems. The method heavily relies on the quick sort algorithm, and we present two important insights. First,…

Computer Vision and Pattern Recognition · Computer Science 2022-09-07 Min Li , Laurent Kneip