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Analyzing the relation between a set of biological sequences can help to identify and understand the evolutionary history of these sequences and the functional relations among them. Multiple Sequence Alignment (MSA) is the main obstacle to…

Quantitative Methods · Quantitative Biology 2017-08-07 Sara Shehab , Sameh Shohdy , Arabi E. Keshk

Problems involving multiple networks are prevalent in many scientific and other domains. In particular, network alignment, or the task of identifying corresponding nodes in different networks, has applications across the social and natural…

Social and Information Networks · Computer Science 2018-08-28 Mark Heimann , Haoming Shen , Tara Safavi , Danai Koutra

Network embedding maps the nodes of a given network into a low-dimensional space such that the semantic similarities among the nodes can be effectively inferred. Most existing approaches use inner-product of node embedding to measure the…

Social and Information Networks · Computer Science 2021-01-21 Luodi Xie , Hong Shen , Jiaxin Ren

Mixed-signal artificial neural networks (ANNs) that employ analog matrix-multiplication accelerators can achieve higher speed and improved power efficiency. Though analog computing is known to be susceptible to noise and device…

Signal Processing · Electrical Eng. & Systems 2021-07-01 Joseph Ulseth , Zheyuan Zhu , Guifang Li , Shuo Pang

Genetic algorithms have played an important role in engineering optimization. Traditional GAs treat each gene separately. However, biophysical studies of gene regulatory networks revealed direct associations between different genes. It…

Neural and Evolutionary Computing · Computer Science 2024-05-01 Zhaoning Shi , Meng Xiang , Zhaoyang Hai , Xiabi Liu , Yan Pei

U-shaped architectures have long dominated the field of medical image segmentation, while Transformers are widely employed for modeling long-range dependencies. The former typically handles scale variations implicitly by aggregating…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Yanhua Zhang , Ke Zhang , Jingyu Wang , Gabriella Balestra , Samanta Rosati , Yulin Wu , Wuwei Wang , Valentina Giannini

As wireless communication systems evolve, automatic modulation recognition (AMR) plays a key role in improving spectrum efficiency, especially in cognitive radio systems. Traditional AMR methods face challenges in complex, noisy…

Signal Processing · Electrical Eng. & Systems 2025-10-22 Wangye Jiang , Haoming Yang , Xinyu Lu , Mingyuan Wang , Huimei Sun , Jingya Zhang

Network embedding represents nodes in a continuous vector space and preserves structure information from the Network. Existing methods usually adopt a "one-size-fits-all" approach when concerning multi-scale structure information, such as…

Machine Learning · Computer Science 2018-03-28 Lei Sang , Min Xu , Shengsheng Qian , Xindong Wu

Over the past years, embedding learning on networks has shown tremendous results in link prediction tasks for complex systems, with a wide range of real-life applications. Learning a representation for each node in a knowledge graph allows…

Machine Learning · Computer Science 2026-02-03 Orell Trautmann , Olaf Wolkenhauer , Clémence Réda

Fast and precise beam alignment is crucial to support high-quality data transmission in millimeter wave (mmWave) communication systems. In this work, we propose a novel deep learning based hierarchical beam alignment method that learns two…

Signal Processing · Electrical Eng. & Systems 2022-09-09 Junyi Yang , Weifeng Zhu , Meixia Tao

Centered kernel alignment (CKA) is a popular metric for comparing representations, determining equivalence of networks, and neuroscience research. However, CKA does not account for the underlying manifold and relies on numerous heuristics…

Machine Learning · Computer Science 2025-10-28 Mohammad Tariqul Islam , Du Liu , Deblina Sarkar

The main challenge to deploy deep neural network (DNN) over a mobile edge network is how to split the DNN model so as to match the network architecture as well as all the nodes' computation and communication capacity. This essentially…

Artificial Intelligence · Computer Science 2021-11-17 Yuqing Tian , Zhaoyang Zhang , Zhaohui Yang , Qianqian Yang

DNA sequence alignment is important today as it is usually the first step in finding gene mutation, evolutionary similarities, protein structure, drug development and cancer treatment. Covid-19 is one recent example. There are many…

Genomics · Quantitative Biology 2023-06-01 Suchindra , Preetam Nagaraj

Modulation classification, an intermediate process between signal detection and demodulation in a physical layer, is now attracting more interest to the cognitive radio field, wherein the performance is powered by artificial intelligence…

Signal Processing · Electrical Eng. & Systems 2020-09-07 Thien Huynh-The , Van-Sang Doan , Cam-Hao Hua , Quoc-Viet Pham , Dong-Seong Kim

Entity alignment typically suffers from the issues of structural heterogeneity and limited seed alignments. In this paper, we propose a novel Multi-channel Graph Neural Network model (MuGNN) to learn alignment-oriented knowledge graph (KG)…

Computation and Language · Computer Science 2019-08-28 Yixin Cao , Zhiyuan Liu , Chengjiang Li , Zhiyuan Liu , Juanzi Li , Tat-Seng Chua

Neural Architecture Search (NAS) aims to find efficient models for multiple tasks. Beyond seeking solutions for a single task, there are surging interests in transferring network design knowledge across multiple tasks. In this line of…

Computer Vision and Pattern Recognition · Computer Science 2022-04-13 Minbin Huang , Zhijian Huang , Changlin Li , Xin Chen , Hang Xu , Zhenguo Li , Xiaodan Liang

Neural additive models (NAMs) enhance the transparency of deep neural networks by handling input features in separate additive sub-networks. However, they lack inherent mechanisms that provide calibrated uncertainties and enable selection…

Machine Learning · Statistics 2024-10-29 Kouroche Bouchiat , Alexander Immer , Hugo Yèche , Gunnar Rätsch , Vincent Fortuin

Multiple-input multiple-output non-orthogonal multiple access (MIMO-NOMA) cellular network is promising for supporting massive connectivity. This paper exploits low-latency machine learning in the MIMO-NOMA uplink transmission environment,…

Information Theory · Computer Science 2021-06-29 Mian Guo , Chun Shan , Mithun Mukherjee , Jaime Lloret , Quansheng Guan

Recent works on Multimodal 3D Computer-aided diagnosis have demonstrated that obtaining a competitive automatic diagnosis model when a 3D convolution neural network (CNN) brings more parameters and medical images are scarce remains…

Computer Vision and Pattern Recognition · Computer Science 2022-01-25 Yin Dai , Yifan Gao , Fayu Liu , Jun Fu

Polymer nanocomposites (PNCs) offer a broad range of thermophysical properties that are linked to their compositions. However, it is challenging to establish a universal composition-property relation of PNCs due to their enormous…

Materials Science · Physics 2022-08-25 Kumar Ayush , Abhishek Seth , Tarak K Patra