Related papers: Postorder Preimages
We introduce the stack-sorting map $\text{SC}_\sigma$ that sorts, in a right-greedy manner, an input permutation through a stack that avoids some vincular pattern $\sigma$. The stack-sorting maps of Cerbai et al. in which the stack avoids a…
We consider the problem of enumeration of planar maps and revisit its one-matrix model solution in the light of recent combinatorial techniques involving conjugated trees. We adapt and generalize these techniques so as to give an…
Recently Kubica et al. (Inf. Process. Let., 2013) and Kim et al. (submitted to Theor. Comp. Sci.) introduced order-preserving pattern matching. In this problem we are looking for consecutive substrings of the text that have the same "shape"…
Applying a method to reconstruct a phylogenetic tree from random data provides a way to detect whether that method has an inherent bias towards certain tree `shapes'. For maximum parsimony, applied to a sequence of random 2-state data, each…
We introduce tools from discrete convexity theory and polyhedral geometry into the theory of West's stack-sorting map $s$. Associated to each permutation $\pi$ is a particular set $\mathcal V(\pi)$ of integer compositions that appears in a…
Let $s$ denote West's stack-sorting map. A permutation is called $t-\textit{sorted}$ if it is of the form $s^t(\mu)$ for some permutation $\mu$. We prove that the maximum number of descents that a $t$-sorted permutation of length $n$ can…
We study the problem of learning a node-labeled tree given independent traces from an appropriately defined deletion channel. This problem, tree trace reconstruction, generalizes string trace reconstruction, which corresponds to the tree…
Given a permutation pi, the application of prefix reversal f^(i) to pi reverses the order of the first i elements of pi. The problem of Sorting By Prefix Reversals (also known as pancake flipping), made famous by Gates and Papadimitriou…
The in-order traversal provides a natural correspondence between binary trees with a decreasing vertex labeling and endofunctions on a finite set. By suitably restricting the vertex labeling we arrive at a class of trees that we call…
Embeddings of graphs into distributions of trees that preserve distances in expectation are a cornerstone of many optimization algorithms. Unfortunately, online or dynamic algorithms which use these embeddings seem inherently randomized and…
In comparative genomics, a transposition is an operation that exchanges two consecutive sequences of genes in a genome. The transposition distance, that is, the minimum number of transpositions needed to transform a genome into another, is,…
Recall that an excedance of a permutation $\pi$ is any position $i$ such that $\pi_i > i$. Inspired by the work of Hopkins, McConville and Propp (Elec. J. Comb., 2017) on sorting using toppling, we say that a permutation is toppleable if it…
Given a countable set X (usually taken to be the natural numbers or integers), an infinite permutation, \pi, of X is a linear ordering of X. This paper investigates the combinatorial complexity of infinite permutations on the natural…
We define a new family of generalized Stirling permutations that can be interpreted in terms of ordered trees and forests. We prove that the number of generalized Stirling permutations with a fixed number of ascents is given by a natural…
Packet reordering is an important property of network traffic that should be captured by analytical models of the Transmission Control Protocol (TCP). We study a combinatorial problem motivated by RESTORED, a TCP modeling methodology that…
We present an algorithm, called the Offset Tree, for learning to make decisions in situations where the payoff of only one choice is observed, rather than all choices. The algorithm reduces this setting to binary classification, allowing…
Billey, Jockusch, and Stanley characterized 321-avoiding permutations by a property of their reduced decompositions. This paper generalizes that result with a detailed study of permutations via their reduced decompositions and the notion of…
We study tree-to-tree transformations that can be defined in first-order logic or monadic second-order logic. We prove a decomposition theorem, which shows that every transformation can be obtained from prime transformations, such as…
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…
We present families of combinatorial classes described as trees with nodes that can carry one of two types of "flowers": integer partitions or integer compositions. Two parameters on the flowers of trees will be considered: the number of…