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Related papers: Active matter clusters at interfaces

200 papers

We study a two-species bidirectional exclusion process, and a single species variant, which is motivated by the motion of organelles and vesicles along microtubules. Specifically, we are interested in the clustering of the particles and…

Statistical Mechanics · Physics 2020-03-17 Jim Chacko , Sudipto Muhuri , Goutam Tripathy

In many cellular signaling pathways, key components form clusters at the cell membrane. Although much work has focused on the mechanisms behind such cluster formation, the implications for downstream signaling remain poorly understood.…

Molecular Networks · Quantitative Biology 2012-03-14 Andrew Mugler , Aimee Gotway Bailey , Koichi Takahashi , Pieter Rein ten Wolde

Cooperation between micro-organisms give rise to novel phenomena like clustering, swarming in suspension. We study the collective behavior of the artificial swimmer called Taylor line at low Reynolds number using multi-particle collision…

Soft Condensed Matter · Physics 2018-02-14 Adyant Agrawal , Sujin B. Babu

There are rich emergent phase behaviors in non-equilibrium active systems. Flocking and clustering are two representative dynamic phases. The relationship between these two phases is still unclear. In the paper, we numerically investigate…

Soft Condensed Matter · Physics 2023-08-09 Lu Chen , Bokai Zhang , Z. C. Tu

Nonlinear coupling between inter- and intra-element dynamics appears as a collective behaviour of elements. The elements in this paper denote symptoms such as a bacterium having an internal network of genes and proteins, a reactive droplet,…

Physics and Society · Physics 2013-05-29 Dan Tanaka

We present a model of soft active particles that leads to a rich array of collective behavior found also in dense biological swarms of bacteria and other unicellular organisms. Our model uses only local interactions, such as Vicsek-type…

Soft Condensed Matter · Physics 2016-10-13 Ruben van Drongelen , Anshuman Pal , Carl P. Goodrich , Timon Idema

Here we show that coupling to curvature has profound effects on collective motion in active systems, leading to patterns not observed in flat space. Biological examples of such active motion in curved environments are numerous: curvature…

Soft Condensed Matter · Physics 2015-03-05 Rastko Sknepnek , Silke Henkes

In this book chapter, we review how systems of simple motile agents can be used as a pathway to intelligent systems. It is a well known result from nature that large groups of entities following simple rules, such as swarms of animals, can…

Soft Condensed Matter · Physics 2025-12-17 Julian Jeggle , Raphael Wittkowski

Collective cell migration plays an essential role in various biological processes, such as development or cancer proliferation. While cell-cell interactions are clearly key determinants of collective cell migration -- in addition to…

We propose a minimal off-lattice model of living organisms where just a very few dynamical rules of growth are assumed. The stable coexistence of many clusters is detected when we replace the global restriction rule by a locally applied…

Physics and Society · Physics 2021-08-19 B. F. de Oliveira , M. V. de Moraes , D. Bazeia , A. Szolnoki

A spacially extended model of the collective behavior of a large number of locally acting organisms is proposed in which organisms move probabilistically between local cells in space, but with weights dependent on local morphogenetic…

adap-org · Physics 2008-06-25 Mark M. Millonas

We numerically examine the transport of an assembly of active run-and-tumble disks interacting with a traveling wave substrate. We show that as a function of substrate strength, wave speed, disk activity, and disk density, a variety of…

Soft Condensed Matter · Physics 2017-01-25 Cs. Sándor , A. Libál , C. Reichhardt , C. J. Olson Reichhardt

Circulating tumor cell clusters play an important role in the metastatic cascade. These clusters can acquire a migratory and more invasive phenotype, and coordinate their motion to migrate as a collective. Before such clusters can form by…

Biological Physics · Physics 2024-12-09 Quirine J. S. Braat , Cornelis Storm , Liesbeth M. C. Janssen

Individual-based models of chemical or biological dynamics usually consider individual entities diffusing in space and performing a birth-death type dynamics. In this work we study the properties of a model in this class where the birth…

Statistical Mechanics · Physics 2009-11-11 Emilio Hernandez-Garcia , Cristobal Lopez

The ability of many living systems to actively self-propel underlies critical biomedical, environmental, and industrial processes. While such active transport is well-studied in uniform settings, environmental complexities such as geometric…

Biological Physics · Physics 2021-08-23 Alejandro Martínez-Calvo , Carolina Trenado-Yuste , Sujit S. Datta

Collective phenomena emerge from the interaction of natural or artificial units with a complex organization. The interplay between structural patterns and dynamics might induce functional clusters that, in general, are different from…

Physics and Society · Physics 2017-04-25 Manlio De Domenico

Epithelial cell clusters often move collectively on a substrate. Mechanical signals play a major role in organizing this behavior. There are a number of experimental observations in these systems which await a comprehensive explanation.…

Biological Physics · Physics 2021-01-22 Youyuan Deng , Herbert Levine , Xiaoming Mao , Leonard M. Sander

Active matter systems provide fascinating examples of pattern formation and collective motility without counterparts in equilibrium systems. Here, we employ Brownian dynamics simulations to study the collective motion and self-organization…

Soft Condensed Matter · Physics 2021-12-20 Leila Abbaspour , Ali Malek , Stefan Karpitschka , Stefan Klumpp

We numerically studied active Brownian particles with attractive interactions. Contrary to our intuition, the attractive force between particles disrupts the formation of a single cluster observed in motility-induced phase separation,…

Soft Condensed Matter · Physics 2025-05-27 Sota Shimamura , Nen Saito , Shuji Ishihara

Many simple natural phenomena are characterized by complex motion that appears random at first glance, but that often displays underlying patterns and behavior that can be clustered in groups. The movement of small pieces of paper falling…

Data Analysis, Statistics and Probability · Physics 2022-10-10 Arthur A. B. Pessa , Matjaz Perc , Haroldo V. Ribeiro