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Multipartite viruses replicate through a puzzling evolutionary strategy. Their genome is segmented into two or more parts, and encapsidated in separate particles that appear to propagate independently. Completing the replication cycle,…

Physics and Society · Physics 2019-03-26 Eugenio Valdano , Susanna Manrubia , Sergio Gómez , Alex Arenas

Wireless sensor networks (WSNs) are composed of spatially distributed sensors and are considered vulnerable to attacks by worms and their variants. Due to the distinct strategies of worms propagation, the dynamic behavior varies depending…

Machine Learning · Computer Science 2022-09-22 Yifan Wang , Siqi Wang , Guangmo Tong

Patterns of nestedness and specialization asymmetry, where specialist species interact mainly with generalists while generalists interact with both generalists and specialists, are often observed in mutualistic and antagonistic bi-partite…

Populations and Evolution · Quantitative Biology 2013-02-26 C. Finn McQuaid , Nicholas F. Britton

To examine the co-evolution of quantitative traits in hosts and parasites, we present and study a co-evolutionary model of a social parasite-host system that incorporates (1) ecological dynamics that feed back into their co-evolutionary…

Dynamical Systems · Mathematics 2015-05-19 Yun Kang , Jennifer Harrison Fewell

We present a model for host-parasite dynamics which incorporates both vertical and horizontal transmission as well as spatial structure. Our model consists of stacked contact processes (CP), where the dynamics of the host is a simple CP on…

Biological Physics · Physics 2015-05-26 Steven J. Court , Richard A. Blythe , Rosalind J. Allen

We present a novel model that describes the within-host evolutionary dynamics of parasites undergoing antigenic variation. The approach uses a multi-type branching process with two types of entities defined according to their relationship…

Populations and Evolution · Quantitative Biology 2013-11-18 Gustavo Guerberoff , Fernando Alvarez-Valin

Generalization, i.e., the ability of solving problem instances that are not available during the system design and development phase, is a critical goal for intelligent systems. A typical way to achieve good generalization is to learn a…

Neural and Evolutionary Computing · Computer Science 2021-02-24 Ke Tang , Shengcai Liu , Peng Yang , Xin Yao

The nature inspired algorithms are becoming popular due to their simplicity and wider applicability. In the recent past several such algorithms have been developed. They are mainly bio-inspired, swarm based, physics based and…

Neural and Evolutionary Computing · Computer Science 2025-03-13 Anand J Kulkarni , Isha Purnapatre , Apoorva S Shastri

In this work we have investigated the evolutionary dynamics of a generalist pathogen, e.g. a virus population, that evolves towards specialisation in an environment with multiple host types. We have particularly explored under which…

Dynamical Systems · Mathematics 2020-06-24 Anel Nurtay , Matthew G. Hennessy , Lluís Alsedà , Santiago F. Elena , Josep Sardanyés

A phylogeny describes the evolutionary history of an evolving population. Evolutionary search algorithms can perfectly track the ancestry of candidate solutions, illuminating a population's trajectory through the search space. However,…

Neural and Evolutionary Computing · Computer Science 2024-02-05 Alexander Lalejini , Marcos Sanson , Jack Garbus , Matthew Andres Moreno , Emily Dolson

Inspired by DNA data of the human cytomegalovirus we propose a model of a two-type parasite population distributed over its hosts. The parasite is capable to persist in its host till the host dies, and to reinfect other hosts. To maintain…

Probability · Mathematics 2019-01-15 Cornelia Pokalyuk , Anton Wakolbinger

In this paper we study invasion probabilities and invasion times of cooperative parasites spreading in spatially structured host populations. The spatial structure of the host population is given by a random geometric graph on $[0,1]^n$,…

Probability · Mathematics 2023-08-16 Vianney Brouard , Cornelia Pokalyuk , Marco Seiler , Hung Tran

Cooperation and competition between pathogens can alter the amount of individuals affected by a co-infection. Nonetheless, the evolution of the pathogens' behavior has been overlooked. Here, we consider a co-evolutionary model where the…

Populations and Evolution · Quantitative Biology 2022-03-23 Fakhteh Ghanbarnejad , Kai Seegers , Alessio Cardillo , Philipp Hövel

Evolutionary algorithms have been shown to obtain good solutions for complex optimization problems in static and dynamic environments. It is important to understand the behaviour of evolutionary algorithms for complex optimization problems…

Neural and Evolutionary Computing · Computer Science 2023-05-31 Jakob Bossek , Aneta Neumann , Frank Neumann

We introduce a generalized version of the frog model to describe the invasion of a parasite population in a spatially structured immobile host population with host immunity on the integer line. Parasites move according to simple symmetric…

Probability · Mathematics 2025-02-17 Sascha Franck , Cornelia Pokalyuk

When there is conspicuous under-exploitation of a limited resource, it is worth asking what mechanisms allow presumably valuable resources to be left unused? Evolutionary biologists have generated a wide range of hypotheses to explain this,…

Populations and Evolution · Quantitative Biology 2015-03-23 Kathryn J. Montovan , Christelle Couchoux , Laura E. Jones , H. Kern Reeve , Saskya van Nouhuys

In a previous study, we considered an information-theoretic model of code evolution. In it, agents obtain information about their (common) environment by the perception of messages of other agents, which is determined by an interaction…

Multiagent Systems · Computer Science 2015-06-03 Andres C. Burgos , Daniel Polani

Parameterized analysis provides powerful mechanisms for obtaining fine-grained insights into different types of algorithms. In this work, we combine this field with evolutionary algorithms and provide parameterized complexity analysis of…

Combinatorics · Mathematics 2023-03-22 Samuel Baguley , Tobias Friedrich , Aneta Neumann , Frank Neumann , Marcus Pappik , Ziena Zeif

We suggest a novel approach to treating symbiotic relations between biological species or social entities. The main idea is the characterisation of symbiotic relations of coexisting species through their mutual influence on their respective…

Populations and Evolution · Quantitative Biology 2015-06-22 V. I. Yukalov , E. P. Yukalova , D. Sornette

We investigate a stochastic individual-based model for the population dynamics of host-virus systems where the microbial hosts may transition into a dormant state upon contact with virions, thus evading infection. Such a contact-mediated…

Populations and Evolution · Quantitative Biology 2022-11-07 Jochen Blath , András Tóbiás