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Multimodal MRI offers complementary multi-scale information to characterize the brain structure. However, it remains challenging to effectively integrate multimodal MRI while achieving neuroscience interpretability. Here we propose to use…

Neurons and Cognition · Quantitative Biology 2025-12-15 Chengzhi Xia , Jianwei Chen , Yixuan Jiang , Qi Yan , Chao Li

Mechanistic interpretability is an emerging diagnostic approach for neural models that has gained traction in broader natural language processing domains. This paradigm aims to provide attribution to components of neural systems where…

Information Retrieval · Computer Science 2025-01-20 Andrew Parry , Catherine Chen , Carsten Eickhoff , Sean MacAvaney

We introduce combinatorial interpretability, a methodology for understanding neural computation by analyzing the combinatorial structures in the sign-based categorization of a network's weights and biases. We demonstrate its power through…

Machine Learning · Computer Science 2025-05-07 Micah Adler , Dan Alistarh , Nir Shavit

For the study of functional aspects of the brain network. This paper is a study on the hypergraph representation, based on the functional regions of the brain network. A new parameter that can measure how many multifunctioning regions each…

Neurons and Cognition · Quantitative Biology 2023-12-20 Anagha P , Selvakumar R

Neuroimaging techniques have shown to be useful when studying the brain's activity. This paper uses Magnetoencephalography (MEG) data, provided by the Human Connectome Project (HCP), in combination with various deep artificial neural…

Machine Learning · Computer Science 2020-07-07 Ismail Alaoui Abdellaoui , Jesus Garcia Fernandez , Caner Sahinli , Siamak Mehrkanoon

Deep learning methods have recently made notable advances in the tasks of classification and representation learning. These tasks are important for brain imaging and neuroscience discovery, making the methods attractive for porting to a…

Neural and Evolutionary Computing · Computer Science 2014-02-20 Sergey M. Plis , Devon R. Hjelm , Ruslan Salakhutdinov , Vince D. Calhoun

The notion of a Brain-Computer Interface system is the acquisition of signals from the brain, processing them, and translating them into commands. The study concentrated on a specific sort of brain signal known as Motor Imagery EEG signals,…

Neurons and Cognition · Quantitative Biology 2023-08-22 Vimal W , Akshansh Gupta

Predictive coding has emerged as an influential normative model of neural computation, with numerous extensions and applications. As such, much effort has been put into mapping PC faithfully onto the cortex, but there are issues that remain…

Neurons and Cognition · Quantitative Biology 2023-03-07 Siavash Golkar , Tiberiu Tesileanu , Yanis Bahroun , Anirvan M. Sengupta , Dmitri B. Chklovskii

Decisions by Machine Learning (ML) models have become ubiquitous. Trusting these decisions requires understanding how algorithms take them. Hence interpretability methods for ML are an active focus of research. A central problem in this…

Machine Learning · Computer Science 2019-01-25 Philipp Schmidt , Felix Biessmann

Non-invasive brainwave decoding is usually done using Magneto/Electroencephalography (MEG/EEG) sensor measurements as inputs. This makes combining datasets and building models with inductive biases difficult as most datasets use different…

Signal Processing · Electrical Eng. & Systems 2024-10-29 Yonatan Gideoni , Ryan Charles Timms , Oiwi Parker Jones

Brain decoding is a key neuroscience field that reconstructs the visual stimuli from brain activity with fMRI, which helps illuminate how the brain represents the world. fMRI-to-image reconstruction has achieved impressive progress by…

Neurons and Cognition · Quantitative Biology 2025-10-27 Guoying Sun , Weiyu Guo , Tong Shao , Yang Yang , Haijin Zeng , Jie Liu , Jingyong Su

Deciphering visual content from functional Magnetic Resonance Imaging (fMRI) helps illuminate the human vision system. However, the scarcity of fMRI data and noise hamper brain decoding model performance. Previous approaches primarily…

Computer Vision and Pattern Recognition · Computer Science 2024-06-14 Yulong Liu , Yongqiang Ma , Guibo Zhu , Haodong Jing , Nanning Zheng

Understanding how the brain responds to sensory inputs is challenging: brain recordings are partial, noisy, and high dimensional; they vary across sessions and subjects and they capture highly nonlinear dynamics. These challenges have led…

Neurons and Cognition · Quantitative Biology 2022-10-03 Omar Chehab , Alexandre Defossez , Jean-Christophe Loiseau , Alexandre Gramfort , Jean-Remi King

Neural networks have greatly boosted performance in computer vision by learning powerful representations of input data. The drawback of end-to-end training for maximal overall performance are black-box models whose hidden representations…

Computer Vision and Pattern Recognition · Computer Science 2020-04-29 Patrick Esser , Robin Rombach , Björn Ommer

Artificial neural networks have long been understood as "black boxes": though we know their computation graphs and learned parameters, the knowledge encoded by these weights and functions they perform are not inherently interpretable. As…

Artificial Intelligence · Computer Science 2024-08-13 Adam Davies , Ashkan Khakzar

Decoding imagined speech engages complex neural processes that are difficult to interpret due to uncertainty in timing and the limited availability of imagined-response datasets. In this study, we present a Magnetoencephalography (MEG)…

Signal Processing · Electrical Eng. & Systems 2025-12-04 Maryam Maghsoudi , Mohsen Rezaeizadeh , Shihab Shamma

When we deploy machine learning models in high-stakes medical settings, we must ensure these models make accurate predictions that are consistent with known medical science. Inherently interpretable networks address this need by explaining…

Computer Vision and Pattern Recognition · Computer Science 2021-10-06 Alina Jade Barnett , Fides Regina Schwartz , Chaofan Tao , Chaofan Chen , Yinhao Ren , Joseph Y. Lo , Cynthia Rudin

Decoding approaches are widely used in neuroscience and machine learning to compare stimulus representations across neural systems, such as different brain regions, organisms, and deep learning models. Popular methods include decoding…

Neurons and Cognition · Quantitative Biology 2026-05-08 Johannes Bertram , Luciano Dyballa , T. Anderson Keller , Savik Kinger , Steven W. Zucker

When predictive models are used to support complex and important decisions, the ability to explain a model's reasoning can increase trust, expose hidden biases, and reduce vulnerability to adversarial attacks. However, attempts at…

Machine Learning · Computer Science 2019-07-11 Dimitris Bertsimas , Arthur Delarue , Patrick Jaillet , Sebastien Martin

The increasing adoption of machine learning tools has led to calls for accountability via model interpretability. But what does it mean for a machine learning model to be interpretable by humans, and how can this be assessed? We focus on…

Machine Learning · Computer Science 2019-08-06 Dylan Slack , Sorelle A. Friedler , Carlos Scheidegger , Chitradeep Dutta Roy
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