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We characterize different cell states, related to cancer and ageing phenotypes, by a measure of entropy of network ensembles, integrating gene expression values and protein interaction networks. The entropy measure estimates the parameter…

Molecular Networks · Quantitative Biology 2013-05-24 G. Menichetti , G. Bianconi , E. Giampieri , G. Castellani , D. Remondini

Despite the recent advances in developing more effective thresholding methods to convert weighted networks to unweighted counterparts, there are still several limitations that need to be addressed. One such limitation is the inability of…

Quantitative Methods · Quantitative Biology 2017-12-04 Farnaz Zamani Esfahlani , Hiroki Sayama

Federated edge learning (FEEL) is a promising distributed learning technique for next-generation wireless networks. FEEL preserves the user's privacy, reduces the communication costs, and exploits the unprecedented capabilities of edge…

Machine Learning · Computer Science 2021-04-13 Abdullatif Albaseer , Mohamed Abdallah , Ala Al-Fuqaha , Aiman Erbad

An information theoretic approach inspired by quantum statistical mechanics was recently proposed as a means to optimize network models and to assess their likelihood against synthetic and real-world networks. Importantly, this method does…

Statistical Mechanics · Physics 2018-09-12 Carlo Nicolini , Vladimir Vlasov , Angelo Bifone

A systematic assessment of global neural network connectivity through direct electrophysiological assays has remained technically unfeasible even in dissociated neuronal cultures. We introduce an improved algorithmic approach based on…

Neurons and Cognition · Quantitative Biology 2015-06-03 Olav Stetter , Demian Battaglia , Jordi Soriano , Theo Geisel

Structural network embedding is a crucial step in enabling effective downstream tasks for complex systems that aims to project a network into a lower-dimensional space while preserving similarities among nodes. We introduce a simple and…

Social and Information Networks · Computer Science 2024-12-23 Giuseppe Squillace , Mirco Tribastone , Max Tschaikowski , Andrea Vandin

How to efficiently design a communication network is a paramount task for network designing and engineering. It is, however, not a single objective optimization process as perceived by most previous researches, i.e., to maximize its…

Networking and Internet Architecture · Computer Science 2015-05-14 Guoqiang Zhang

Many concepts in network science are based on idealized network models. Infrastructure networks, however, are strongly constrained by specific engineering and economic constraints which do not appear in such models. One result is that…

Networking and Internet Architecture · Computer Science 2015-05-18 Glenn Lawyer

In this paper, we focus on the unsupervised setting for structure learning of deep neural networks and propose to adopt the efficient coding principle, rooted in information theory and developed in computational neuroscience, to guide the…

Machine Learning · Computer Science 2021-05-31 Jinhui Yuan , Fei Pan , Chunting Zhou , Tao Qin , Tie-Yan Liu

Unsupervised feature extraction algorithms form one of the most important building blocks in machine learning systems. These algorithms are often adapted to the event-based domain to perform online learning in neuromorphic hardware.…

Neural and Evolutionary Computing · Computer Science 2019-07-31 Saeed Afshar , Ying Xu , Jonathan Tapson , André van Schaik , Gregory Cohen

Discriminating between correct and incorrect substrates is a core process in biology but how is energy apportioned between the conflicting demands of accuracy ($\mu$), speed ($\sigma$) and total entropy production rate ($P$)? Previous…

Molecular Networks · Quantitative Biology 2019-06-18 Felix Wong , Ariel Amir , Jeremy Gunawardena

Understanding how network function constrains neural connectivity is a central challenge in neuroscience. An influential approach is to train neural networks with gradient descent on cognitive tasks and characterize the resulting…

Neurons and Cognition · Quantitative Biology 2026-05-26 Ludwig Hruza , Srdjan Ostojic

Neural Network Pruning has been established as driving force in the exploration of memory and energy efficient solutions with high throughput both during training and at test time. In this paper, we introduce a novel criterion for model…

Machine Learning · Computer Science 2025-12-09 Angelos-Christos Maroudis , Sotirios Xydis

The network inference problem arises in biological research when one needs to quantitatively choose the best protein-interaction model for explaining a phenotype. The diverse nature of the data and nonlinear dynamics pose significant…

Molecular Networks · Quantitative Biology 2025-12-22 Guy Karlebach

Images of natural systems may represent patterns of network-like structure, which could reveal important information about the topological properties of the underlying subject. However, the image itself does not automatically provide a…

Computer Vision and Pattern Recognition · Computer Science 2021-09-03 Diego Baptista , Caterina De Bacco

The co-occurrence association is widely observed in many empirical data. Mining the information in co-occurrence data is essential for advancing our understanding of systems such as social networks, ecosystem, and brain network. Measuring…

Information Retrieval · Computer Science 2020-07-28 Xiaomeng Wang , Yijun Ran , Tao Jia

Inference of the network structure (e.g., routing topology) and dynamics (e.g., link performance) is an essential component in many network design and management tasks. In this paper we propose a new, general framework for analyzing and…

Networking and Internet Architecture · Computer Science 2019-11-13 Jian Ni , Sekhar Tatikonda

Information measures are often used to assess the efficacy of neural networks, and learning rules can be derived through optimization procedures on such measures. In biological neural networks, computation is restricted by the amount of…

Neurons and Cognition · Quantitative Biology 2021-03-12 Dmytro Grytskyy , Renaud B. Jolivet

Inferring the connectivity structure of networked systems from data is an extremely important task in many areas of science. Most of real-world networks exhibit sparsely connected topologies, with links between nodes that in some cases may…

Physics and Society · Physics 2022-06-02 Lei Shi , Chen Shen , Libin Jin , Qi Shi , Zhen Wang , Marko Jusup , Stefano Boccaletti

Deep neural networks have seen tremendous success for different modalities of data including images, videos, and speech. This success has led to their deployment in mobile and embedded systems for real-time applications. However, making…

Computer Vision and Pattern Recognition · Computer Science 2019-01-31 Nitthilan Kannappan Jayakodi , Anwesha Chatterjee , Wonje Choi , Janardhan Rao Doppa , Partha Pratim Pande