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We empirically evaluate the finite-time performance of several simulation-optimization algorithms on a testbed of problems with the goal of motivating further development of algorithms with strong finite-time performance. We investigate if…

Optimization and Control · Mathematics 2017-05-23 Naijia Dong , David J. Eckman , Matthias Poloczek , Xueqi Zhao , Shane G. Henderson

SimOmics is an R package designed to generate realistic, multivariate, and multi-omics synthetic datasets. It is intended for use in benchmarking, method development, and reproducibility in bioinformatics, particularly in the context of…

Genomics · Quantitative Biology 2025-07-15 Kaitao Lai

In many applications, such as physiology and finance, large time series data bases are to be analyzed requiring the computation of linear, nonlinear and other measures. Such measures have been developed and implemented in commercial and…

Computation · Statistics 2010-02-10 Dimitris Kugiumtzis , Alkiviadis Tsimpiris

Simulation is one of the most powerful tools we have for evaluating the performance of Opportunistic Networks. In this survey, we focus on available tools and models, compare their performance and precision and experimentally show the…

Simulation is widely adopted in the study of modern computer networks. In this context, OMNeT++ provides a set of very effective tools that span from the definition of the network, to the automation of simulation execution and quick result…

Performance · Computer Science 2016-09-16 Antonio Virdis , Carlo Vallati , Giovanni Nardini

This manuscript describes the software package SCOUT, which analyzes, characterizes, and corrects one-dimensional signals. Specifically, it allows to check and correct for stationarity, detect spurious samples, check for normality, check…

Data Analysis, Statistics and Probability · Physics 2019-11-07 Richard Semaan , Vikas Yadav

State Space Models (SSM) is a MATLAB 7.0 software toolbox for doing time series analysis by state space methods. The software features fully interactive construction and combination of models, with support for univariate and multivariate…

Computation · Statistics 2007-06-26 Jyh-Ying Peng , John A. D. Aston

The Statistical Toolkit is an open source system specialized in the statistical comparison of distributions. It addresses requirements common to different experimental domains, such as simulation validation (e.g. comparison of experimental…

Computational Physics · Physics 2015-06-11 M Batic , A. M. Paganoni , A. Pfeiffer , M. G. Pia , A. Ribon

The `equation-free toolbox' empowers the computer-assisted analysis of complex, multiscale systems. Its aim is to enable you to immediately use microscopic simulators to perform macro-scale system level tasks and analysis, because…

Mathematical Software · Computer Science 2020-04-08 John Maclean , J. E. Bunder , A. J. Roberts

Simulation Optimization (SO) refers to the optimization of an objective function subject to constraints, both of which can be evaluated through a stochastic simulation. To address specific features of a particular simulation---discrete or…

Data Structures and Algorithms · Computer Science 2017-06-28 Satyajith Amaran , Nikolaos V. Sahinidis , Bikram Sharda , Scott J. Bury

We present a data simulation package designed to create a series of simulated data samples for a detector with non-destructive sampling capability. The original intent of this software was to provide a method for generating simulated images…

The ability of a cell to communicate with its environment is essential for key cellular functions like replication, metabolism, or cell fate decisions. The involved molecular mechanisms are highly dynamic and difficult to capture…

Human-Computer Interaction · Computer Science 2025-09-11 Lena Cibulski , Fiete Haack , Adelinde Uhrmacher , Stefan Bruckner

The aim of a probabilistic output analysis is to derive a probability distribution of possible output values for a program from a probability distribution of its input. We present a method for performing static output analysis, based on…

Programming Languages · Computer Science 2015-09-30 Mads Rosendahl , Maja H. Kirkeby

User simulators are increasingly central to interactive information retrieval, yet the community lacks standardized evaluation tools. Simulators serve two objectives, behavioral realism (matching real user behavior) and tester reliability…

Information Retrieval · Computer Science 2026-05-01 Saber Zerhoudi

The Fault Detection and Isolation Tools (FDITOOLS) is a collection of MATLAB functions for the analysis and solution of fault detection and model detection problems. The implemented functions are based on the computational procedures…

Systems and Control · Computer Science 2018-11-21 Andreas Varga

We propose to use agent-based simulation models for the development of statistical methods in Official Statistics, especially in relation with the new digital data sources. We present a mobile network data simulator which is managed through…

Applications · Statistics 2022-01-21 B. Oancea , D. Salgado , S. Barragan , M. Necula

Due to the catastrophic consequences of tsunamis, early warnings need to be issued quickly in order to mitigate the hazard. Additionally, there is a need to represent the uncertainty in the predictions of tsunami characteristics…

Applications · Statistics 2015-06-04 A. Sarri , S. Guillas , F. Dias

This paper presents an approach to analyzing two-dimensional temporal datasets focusing on identifying observations that are significant in calculating the outliers of a scatterplot. We also propose a prototype, called Outliagnostics, to…

Human-Computer Interaction · Computer Science 2019-10-31 Vung Pham , Tommy Dang

Here practical aspects of conducting research via computer simulations are discussed. The following issues are addressed: software engineering, object-oriented software development, programming style, macros, make files, scripts, libraries,…

Condensed Matter · Physics 2009-02-02 Alexander K. Hartmann , Heiko Rieger

Linear models are a core component for statistical software that analyzes treatment effects. They are used in experimentation platforms where analysis is automated, as well as scientific studies where analysis is done locally and manually.…

Computation · Statistics 2019-10-15 Jeffrey Wong , Randall Lewis , Matthew Wardrop
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