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To maintain homeostasis, living cells process information with networks of interacting molecules. Traditional models for cellular information processing have focused on networks of chemical reactions between molecules. Here, we describe how…

Biological Physics · Physics 2025-08-01 Arvind Murugan , David Zwicker , Charlotta Lorenz , Eric R. Dufresne

The marriage of two vibrant fields---photonics and neuromorphic processing---is fundamentally enabled by the strong analogies within the underlying physics between the dynamics of biological neurons and lasers, both of which can be…

Neurons and Cognition · Quantitative Biology 2014-07-11 Bhavin J. Shastri , Alexander N. Tait , Mitchell A. Nahmias , Paul R. Prucnal

High-dimensional nonlinear dynamical systems including neural networks can be utilized as a computational resource for information processing. In this sense, nonlinear wave systems are good candidate for such a computational resource. Here,…

Applied Physics · Physics 2019-07-30 Satoshi Sunada , Atsushi Uchida

Biological and artificial systems encode information through several complex nonlinear operations, making their exact study a formidable challenge. These internal mechanisms often take place across multiple timescales and process external…

Statistical Mechanics · Physics 2024-11-19 Giorgio Nicoletti , Daniel M. Busiello

The behaviour of many real-world phenomena can be modelled by nonlinear dynamical systems whereby a latent system state is observed through a filter. We are interested in interacting subsystems of this form, which we model by a set of…

Machine Learning · Computer Science 2017-02-20 Oliver M. Cliff , Mikhail Prokopenko , Robert Fitch

We describe modeling approaches to a "network" of connected enzyme-catalyzed reactions, with added (bio)chemical processes that introduce biochemical filtering steps into the functioning of such a biocatalytic cascade. Theoretical…

Molecular Networks · Quantitative Biology 2016-12-13 Vladimir Privman

Deep neural networks have achieved remarkable breakthroughs by leveraging multiple layers of data processing to extract hidden representations, albeit at the cost of large electronic computing power. To enhance energy efficiency and speed,…

Complex systems of many interacting components exhibit patterns of recurrence and emergent behaviors in their time evolution that can be understood from a new perspective of physics of information dynamics, modeled after one such system,…

Disordered Systems and Neural Networks · Physics 2026-01-27 Uday S. Goteti , Shane A. Cybart , Robert C. Dynes

We investigate a phase transition from linear to nonlinear information processing in echo state networks, a widely used framework in reservoir computing. The network consists of randomly connected recurrent nodes perturbed by a noise and…

Disordered Systems and Neural Networks · Physics 2025-11-25 Masaya Matsumura , Taiki Haga

Living organisms rely on molecular networks, such as gene circuits and signaling pathways, for information processing and robust decision-making in crowded, noisy environments. Recent advances show that interacting biomolecules…

The subject of this paper is the evolution of the concept of information processing in regular structures based on multi-level processing in nested cellular automata. The essence of the proposed model is a discrete space-time containing…

Neural and Evolutionary Computing · Computer Science 2022-10-13 Jerzy Szynka

This paper proposes a tractable framework to determine key characteristics of non-linear dynamic systems by converting physics-informed neural networks to a mixed integer linear program. Our focus is on power system applications.…

Systems and Control · Electrical Eng. & Systems 2021-04-01 Georgios S. Misyris , Jochen Stiasny , Spyros Chatzivasileiadis

Several guiding principles for thought processes are proposed and a neural-network-type model implementing these principles is presented and studied. We suggest to consider thinking within an associative network built-up of overlapping…

Neurons and Cognition · Quantitative Biology 2007-05-23 Claudius Gros

Neuromorphic computing systems comprise networks of neurons that use asynchronous events for both computation and communication. This type of representation offers several advantages in terms of bandwidth and power consumption in…

Hardware Architecture · Computer Science 2017-11-07 Saber Moradi , Ning Qiao , Fabio Stefanini , Giacomo Indiveri

A high-speed multiprocessor architecture for brain-like analyzing information represented in analytic, graph- and table forms of associative relations to search, recognize and make a decision in n-dimensional vector discrete space is…

Hardware Architecture · Computer Science 2012-01-05 Vladimir Hahanov , Wajeb Gharibi , Eugenia Litvinova , Svetlana Chumachenko

Information flow provides a natural measure for the causal interaction between dynamical events. This study extends our previous rigorous formalism of componentwise information flow to the bulk information flow between two complex…

Neurons and Cognition · Quantitative Biology 2021-12-30 X. San Liang

This Letter proposes a controlled coupling process for information processing. The net effect of conventional coupling is isolated from the dynamical system and is analyzed in depth. The stability of the process is studied. We show that the…

Chaotic Dynamics · Physics 2007-05-23 G. W. Wei , Shan Zhao

Simple nonlinear dynamical systems with multiple stable stationary states are often taken as models for switchlike biological systems. This paper considers the interaction of multiple such simple multistable systems when they are embedded…

Quantitative Methods · Quantitative Biology 2008-04-10 Dennis Cates Wylie

We realize autonomous Boolean networks by using logic gates in their autonomous mode-of-operation on a field-programmable gate array. This allows us to implement time-continuous systems with complex dynamical behaviors that can be…

Adaptation and Self-Organizing Systems · Physics 2013-12-16 David P. Rosin , Damien Rontani , Daniel J. Gauthier , Eckehard Schöll

Novel materials and devices in photonics have the potential to revolutionize optical information processing, beyond conventional binary-logic approaches. Laser systems offer a rich repertoire of useful dynamical behaviors, including the…

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