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This paper introduces diffusion protein language model (DPLM), a versatile protein language model that demonstrates strong generative and predictive capabilities for protein sequences. We first pre-train scalable DPLMs from…

Machine Learning · Computer Science 2024-10-17 Xinyou Wang , Zaixiang Zheng , Fei Ye , Dongyu Xue , Shujian Huang , Quanquan Gu

Process mining is increasingly using textual information associated with events to tackle tasks such as anomaly detection and process discovery. Such semantics-aware process mining focuses on what behavior should be possible in a process…

Computation and Language · Computer Science 2025-08-25 Vira Pyrih , Adrian Rebmann , Han van der Aa

Many NLP applications require models to be interpretable. However, many successful neural architectures, including transformers, still lack effective interpretation methods. A possible solution could rely on building explanations from…

Computation and Language · Computer Science 2024-04-04 Federico Ruggeri , Marco Lippi , Paolo Torroni

Business process management is increasingly practiced using data-driven approaches. Still, classical imperative process models, which are typically formalized using Petri nets, are not straightforwardly applicable to the relational…

While there has been a recent explosion of work on ExplainableAI ExAI on deep models that operate on imagery and tabular data, textual datasets present new challenges to the ExAI community. Such challenges can be attributed to the lack of…

Computation and Language · Computer Science 2022-10-14 Julia El Zini , Mariette Awad

Pre-trained language models (PLMs) have been the de facto paradigm for most natural language processing (NLP) tasks. This also benefits biomedical domain: researchers from informatics, medicine, and computer science (CS) communities propose…

Computation and Language · Computer Science 2023-07-18 Benyou Wang , Qianqian Xie , Jiahuan Pei , Zhihong Chen , Prayag Tiwari , Zhao Li , Jie fu

Probabilistic programming (PP) is a programming paradigm that allows for writing statistical models like ordinary programs, performing simulations by running those programs, and analyzing and refining their statistical behavior using…

Programming Languages · Computer Science 2024-06-19 Martin Kuhn , Joscha Grüger , Christoph Matheja , Andrey Rivkin

The process mining community has recently recognized the potential of large language models (LLMs) for tackling various process mining tasks. Initial studies report the capability of LLMs to support process analysis and even, to some…

Computation and Language · Computer Science 2024-07-03 Adrian Rebmann , Fabian David Schmidt , Goran Glavaš , Han van der Aa

Large Language Models (LLMs) are becoming increasingly popular in pervasive computing due to their versatility and strong performance. However, despite their ubiquitous use, the exact mechanisms underlying their outstanding performance…

Computation and Language · Computer Science 2026-02-02 Alhassan Abdelhalim , Janick Edinger , Sören Laue , Michaela Regneri

Efficient planning, resource management, and consistent operations often rely on converting textual process documents into formal Business Process Model and Notation (BPMN) models. However, this conversion process remains time-intensive and…

Data-driven approaches are becoming more common as problem-solving techniques in many areas of research and industry. In most cases, machine learning models are the key component of these solutions, but a solution involves multiple such…

Artificial Intelligence · Computer Science 2019-06-20 Parisa Kordjamshidi , Dan Roth , Kristian Kersting

Current challenges of the manufacturing industry require modular and changeable manufacturing systems that can be adapted to variable conditions with little effort. At the same time, production recipes typically represent important company…

Software Engineering · Computer Science 2022-11-07 Aljosha Köcher , Luis Miguel Vieira da Silva , Alexander Fay

Models are fundamentally crucial to many scientific fields, including software engineering, systems engineering, enterprise modeling, and business modeling. This paper focuses on diagrammatic conceptual modeling, as opposed to mathematical…

Software Engineering · Computer Science 2021-10-28 Sabah Al-Fedaghi , Mahdi Modhaffar

The requirements engineering process is a crucial stage of the software development life cycle. It involves various stakeholders from different professional backgrounds, particularly in the requirements elicitation phase. Each stakeholder…

Computation and Language · Computer Science 2020-03-31 Vaibhav Jain , Ruchika Malhotra , Sanskar Jain , Nishant Tanwar

Conventional predictive modeling of parametric relationships in manufacturing processes is limited by the subjectivity of human expertise and intuition on the one hand and by the cost and time of experimental data generation on the other…

Computation and Language · Computer Science 2025-06-26 Kiarash Naghavi Khanghah , Anandkumar Patel , Rajiv Malhotra , Hongyi Xu

Sequential programming and work-flow programming are two useful, but radically different, ways of describing computational processing. Of the two, it is sequential programming that we teach all programmers and support by programming…

Programming Languages · Computer Science 2011-08-24 William Harrison

PROMELA (Process Meta Language) is a high-level specification language designed for modeling interactions in distributed systems. PROMELA is used as the input language for the model checker SPIN (Simple Promela INterpreter). The main…

Programming Languages · Computer Science 2021-08-30 Marco Comini , María del Mar Gallardo , Alicia Villanueva

Cross-lingual representations of words enable us to reason about word meaning in multilingual contexts and are a key facilitator of cross-lingual transfer when developing natural language processing models for low-resource languages. In…

Computation and Language · Computer Science 2019-10-08 Sebastian Ruder , Ivan Vulić , Anders Søgaard

Parallel programs in high performance computing (HPC) continue to grow in complexity and scale in the exascale era. The diversity in hardware and parallel programming models make developing, optimizing, and maintaining parallel software…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-15 Daniel Nichols , Aniruddha Marathe , Harshitha Menon , Todd Gamblin , Abhinav Bhatele

Text embeddings have become an essential part of a variety of language applications. However, methods for interpreting, exploring and reversing embedding spaces are limited, reducing transparency and precluding potentially valuable…

Computation and Language · Computer Science 2026-01-27 Brian Ondov , Chia-Hsuan Chang , Yujia Zhou , Mauro Giuffrè , Hua Xu