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Related papers: TAPER: query-aware, partition-enhancement for larg…

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Acquiring plausible pathways on high-dimensional structural distributions is beneficial in several domains. For example, in the drug discovery field, a protein conformational pathway, i.e. a highly probable sequence of protein structural…

Quantitative Methods · Quantitative Biology 2025-06-04 Ziyad Oulhaj , Yoshiyuki Ishii , Kento Ohga , Kimihiro Yamazaki , Mutsuyo Wada , Yuhei Umeda , Takashi Kato , Yuichiro Wada , Hiroaki Kurihara

Processing large-scale graphs, containing billions of entities, is critical across fields like bioinformatics, high-performance computing, navigation and route planning, among others. Efficient graph partitioning, which divides a graph into…

Data Structures and Algorithms · Computer Science 2024-10-11 Adil Chhabra , Florian Kurpicz , Christian Schulz , Dominik Schweisgut , Daniel Seemaier

In this paper, we propose Revolver, a parallel graph partitioning algorithm capable of partitioning large-scale graphs on a single shared-memory machine. Revolver employs an asynchronous processing framework, which leverages reinforcement…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-18 Mohammad Hasanzadeh Mofrad , Rami Melhem , Mohammad Hammoud

With the widespread use of shared-nothing clusters of servers, there has been a proliferation of distributed object stores that offer high availability, reliability and enhanced performance for MapReduce-style workloads. However, relational…

Databases · Computer Science 2013-12-03 Lukasz Golab , Marios Hadjieleftheriou , Howard Karloff , Barna Saha

The graph partitioning problem has many applications in scientific computing such as computer aided design, data mining, image compression and other applications with sparse-matrix vector multiplications as a kernel operation. In many cases…

Data Structures and Algorithms · Computer Science 2016-01-08 Foad Lotfifar , Matthew Johnson

Deep recommender systems rely heavily on large embedding tables to handle high-cardinality categorical features such as user/item identifiers, and face significant memory constraints at scale. To tackle this challenge, hashing techniques…

Information Retrieval · Computer Science 2025-02-11 Xinyi Wu , Donald Loveland , Runjin Chen , Yozen Liu , Xin Chen , Leonardo Neves , Ali Jadbabaie , Clark Mingxuan Ju , Neil Shah , Tong Zhao

Many important real-world applications-such as social networks or distributed data bases-can be modeled as hypergraphs. In such a model, vertices represent entities-such as users or data records-whereas hyperedges model a group membership…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-11-15 Christian Mayer , Ruben Mayer , Sukanya Bhowmik , Lukas Epple , Kurt Rothermel

Computing maximum independent sets in graphs is an important problem in computer science. In this paper, we develop an evolutionary algorithm to tackle the problem. The core innovations of the algorithm are very natural combine operations…

Data Structures and Algorithms · Computer Science 2015-02-06 Sebastian Lamm , Peter Sanders , Christian Schulz

The modeling flexibility provided by hypergraphs has drawn a lot of interest from the combinatorial scientific community, leading to novel models and algorithms, their applications, and development of associated tools. Hypergraphs are now a…

Data Structures and Algorithms · Computer Science 2015-03-19 Enver Kayaaslan , Ali Pinar , Umit V. Catalyurek , Cevdet Aykanat

Graph traversals are a basic but fundamental ingredient for a variety of graph algorithms and graph-oriented queries. To achieve the best possible query performance, they need to be implemented at the core of a database management system…

Databases · Computer Science 2014-12-22 Marcus Paradies , Wolfgang Lehner , Christof Bornhoevd

The graph partitioning problem is widely used and studied in many practical and theoretical applications. The multilevel strategies represent today one of the most effective and efficient generic frameworks for solving this problem on…

Data Structures and Algorithms · Computer Science 2012-04-04 Ilya Safro , Peter Sanders , Christian Schulz

In the real world a graph is often fragmented and distributed across different sites. This highlights the need for evaluating queries on distributed graphs. This paper proposes distributed evaluation algorithms for three classes of queries:…

Databases · Computer Science 2012-08-02 Wenfei Fan , Xin Wang , Yinghui Wu

Graph partitioning plays a pivotal role in various distributed graph processing applications, including graph analytics, graph neural network training, and distributed graph databases. Graphs that require distributed settings are often too…

Databases · Computer Science 2024-12-11 Milad Rezaei Hajidehi , Sraavan Sridhar , Margo Seltzer

Graphs, consisting of vertices and edges, are vital for representing complex relationships in fields like social networks, finance, and blockchain. Visualizing these graphs helps analysts identify structural patterns, with readability…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-11-18 Sanggeon Yun

Real-world graphs are constantly evolving, which demands updates of the previous analysis results to accommodate graph changes. By using the memoized previous computation state, incremental graph computation can reduce unnecessary…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-04-18 Song Yu , Shufeng Gong , Yanfeng Zhang , Wenyuan Yu , Qiang Yin , Chao Tian , Qian Tao , Yongze Yan , Ge Yu , Jingren Zhou

This paper presents a novel meta algorithm, Partition-Merge (PM), which takes existing centralized algorithms for graph computation and makes them distributed and faster. In a nutshell, PM divides the graph into small subgraphs using our…

Data Structures and Algorithms · Computer Science 2013-09-25 Vincent Blondel , Kyomin Jung , Pushmeet Kohli , Devavrat Shah

Graph partitioning (GP) is a classic problem that divides the node set of a graph into densely-connected blocks. Following the IEEE HPEC Graph Challenge and recent advances in pre-training techniques (e.g., large-language models), we…

Machine Learning · Computer Science 2024-09-04 Meng Qin , Chaorui Zhang , Yu Gao , Yibin Ding , Weipeng Jiang , Weixi Zhang , Wei Han , Bo Bai

Tabular data optimization methods aim to automatically find an optimal feature transformation process that generates high-value features and improves the performance of downstream machine learning tasks. Current frameworks for automated…

Machine Learning · Computer Science 2024-06-12 Xiaohan Huang , Dongjie Wang , Zhiyuan Ning , Ziyue Qiao , Qingqing Long , Haowei Zhu , Min Wu , Yuanchun Zhou , Meng Xiao

Hash tables are ubiquitous and used in a wide range of applications for efficient probing of large and unsorted data. If designed properly, hash-tables can enable efficients look ups in a constant number of operations or commonly referred…

Data Structures and Algorithms · Computer Science 2019-07-08 Oded Green

With the ubiquity of large-scale graph data in a variety of application domains, querying them effectively is a challenge. In particular, reachability queries are becoming increasingly important, especially for containment, subsumption, and…

Databases · Computer Science 2013-01-08 Hilmi Yildirim , Vineet Chaoji , Mohammed J. Zaki
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