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In the evolution of a genome, the gene sequence is sometimes rearranged, for example by transposition of two adjacent gene blocks. In biocombinatorics, one tries to reconstruct these rearrangement incidents from the resulting permutation.…

Combinatorics · Mathematics 2007-05-23 Henrik Eriksson , Kimmo Eriksson , Jonas Sjostrand

We consider a coupled bistable N-particle system driven by a Brownian noise, with a strong coupling corresponding to the synchronised regime. Our aim is to obtain sharp estimates on the metastable transition times between the two stable…

Probability · Mathematics 2010-03-01 Florent Barret , Anton Bovier , Sylvie Méléard

We study molecular dynamics within populations of diffusively coupled cells under the assumption of fast diffusive exchange. As a technical tool, we propose conditions on boundedness and ultimate boundedness for systems with a singular…

Cell Behavior · Quantitative Biology 2012-12-19 Steffen Waldherr , Frank Allgöwer

The coexistence of an abnormal rhythm and a normal steady state is often observed in nature (e.g., epilepsy). Such a system is modeled as a bistable oscillator that possesses both a limit cycle and a fixed point. Although bistable…

Adaptation and Self-Organizing Systems · Physics 2025-01-07 Yusuke Kato , Hiroshi Kori

We are concerned with random ordinary differential equations (RODEs). Our main question of interest is how uncertainties in system parameters propagate through the possibly highly nonlinear dynamical system and affect the system's…

Dynamical Systems · Mathematics 2021-08-30 Christian Kuehn , Kerstin Lux

The escape statistics of a gradient dynamical system perturbed by noise can be estimated using properties of the associated potential landscape. More generally, the Freidlin and Wentzell quasipotential (QP) can be used for similar purposes,…

Dynamical Systems · Mathematics 2023-02-01 Peter Ashwin , Jennifer Creaser , Krasimira Tsaneva-Atanasova

Pulse-coupled systems such as spiking neural networks exhibit nontrivial invariant sets in the form of attracting yet unstable saddle periodic orbits where units are synchronized into groups. Heteroclinic connections between such orbits may…

Adaptation and Self-Organizing Systems · Physics 2020-11-03 Fabio Schittler Neves , Marc Timme

We review some properties of dynamical systems with slowly varying parameters, when a parameter is moved through a bifurcation point of the static system. Bifurcations with a single zero eigenvalue may create hysteresis cycles, whose area…

chao-dyn · Physics 2009-10-31 N. Berglund

We analyze a family of clustered excitatory-inhibitory neural networks and the underlying bifurcation structures that arise because of permutation symmetries in the network as the global coupling strength $g$ is varied. We primarily…

Chaotic Dynamics · Physics 2022-12-09 Ross Parker , Andrea K. Barreiro

The properties of motion close to the transition of a stable family of periodic orbits to complex instability is investigated with two symplectic 4D mappings, natural extensions of the standard mapping. As for the other types of…

chao-dyn · Physics 2008-02-03 Mercè Ollé , Daniel Pfenniger

We study parametrically driven quantum oscillators and show that, even for weak coupling between the oscillators, they can exhibit various many-body states with broken time-translation symmetry. In the quantum-coherent regime, the symmetry…

Mesoscale and Nanoscale Physics · Physics 2018-12-05 M. I. Dykman , Christoph Bruder , Niels Lörch , Yaxing Zhang

The state of many physical, biological and socio-technical systems evolves by combining smooth local transitions and abrupt resetting events to a set of reference values. The inclusion of the resetting mechanism not only provides the…

Statistical Mechanics · Physics 2022-12-21 Oriol Artime

Experimental observations of an almost symmetric electronic circuit show complicated sequences of bifurcations. These results are discussed in the light of a theory of imperfect global bifurcations. It is shown that much of the dynamics…

Chaotic Dynamics · Physics 2009-11-07 Paul Glendinning , Jan Abshagen , Tom Mullin

This paper presents an analysis on nonstandard generalized Hopf bifurcation in a class of switched systems where the lost of stability of linearized systems is not due to the crossing of their complex conjugate eigenvalues but relevant to…

Dynamical Systems · Mathematics 2010-01-14 Xiao-Song Yang , Songmei Huan

Nonsmooth formulations of physical models are common, particularly in climate modeling. However, in many of these models, there is little justification for this modeling choice, and no mathematical indication that the resulting behavior in…

Dynamical Systems · Mathematics 2016-02-01 Julie Leifeld

In this paper, we consider a coupled Brusselator model of chemical reactions, for which no symmetry for the coupling matrices is assumed. We show that the model can undergoes a Hopf bifurcation, and consequently periodic solutions can arise…

Dynamical Systems · Mathematics 2023-05-30 Shanshan Chen , Yihuan Sun

We investigate coherent and incoherent tunneling phenomena in conditions of crossing diabatic potentials. We consider a model of two crossing parabolic diabatic potentials with an independent of coordinates constant adiabatic coupling. As a…

Statistical Mechanics · Physics 2007-05-23 V. A. Benderskii , E. V. Vetoshkin , E. I. Kats

In this paper we investigate the crossing-sliding bifurcations of planar Filippov systems with $\mathbb{Z}_2$-symmetry. Such bifurcations are triggered by the perturbations of a critical crossing cycle and constitute an important class of…

Dynamical Systems · Mathematics 2025-12-18 Xingwu Chen , Jiahao Li , Tao Li

Decoupling systems into independently evolving components has a long history of simplifying seemingly complex systems. They enable a better understanding of the underlying dynamics and causal structures while providing more efficient means…

Quantum Physics · Physics 2024-06-11 Ximing Wang , Chengran Yang , Mile Gu

The system in which a small rigid ball is bouncing repeatedly on a massive at table vibrating vertically, so-called the bouncing ball system, has been widely studied. Under the assumption that the table is vibrating with a piecewise…

Chaotic Dynamics · Physics 2020-09-08 Yudai Okishio , Hiroaki Ito , Hiroyuki Kitahata