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We present a two channel driven lattice gas model with oppositely directed species moving on two parallel lanes with lane switching processes. We study correlated lane switching mechanism for particles so that switching may occur with…

Statistical Mechanics · Physics 2015-05-28 Sudipto Muhuri , Ignacio Pagonabarraga

Black phosphorus exhibits a high degree of band anisotropy. However, we found that its in-plane static screening remains relatively isotropic for momenta relevant to elastic long-range scattering processes. On the other hand, the collective…

We consider the translocation dynamics of a polymer chain forced through a nanopore by an external force on its head monomer on the trans side. For a proper theoretical treatment we generalize the iso-flux tension propagation (IFTP) theory…

Soft Condensed Matter · Physics 2018-02-14 Jalal Sarabadani , Bappa Ghosh , Srabanti Chaudhury , Tapio Ala-Nissila

The microscopic model of semi-crystalline polymer in high-elastic state is proposed. The model is based on the assumption that, below the melting temperature, the semi-crystalline polymer comprises crystal nuclei connected by stretched…

Soft Condensed Matter · Physics 2013-06-20 V. V. Atrazhev , S. F. Burlatsky , D. V. Dmitriev , V. I. Sultanov

Sap exudation is the process whereby trees such as sugar (Acer saccharum) and red maple (Acer rubrum) generate unusually high positive stem pressure in response to repeated cycles of freeze and thaw. This elevated xylem pressure permits the…

After a brief review of the protein folding quantum theory and a short discussion on its experimental evidences the mechanism of glucose transport across membrane is studied from the point of quantum conformational transition. The…

Biomolecules · Quantitative Biology 2014-11-27 Liaofu Luo

A previously developed multi-ion, two-stream Flux-Corrected Transport (FCT) hydrodynamic model for plasmasphere refilling has been extended to incorporate self-consistent electron temperature evolution. The past assumption of a constant…

Space Physics · Physics 2025-12-29 Jaden Fitzpatrick , Kausik Chatterjee , Naomi Maruyama

We report results of molecular-dynamics simulations for a glassy polymer melt consisting of short, linear bead-spring chains. It was shown in previous work that this onset of the glassy slowing down is compatible with the predictions of the…

Soft Condensed Matter · Physics 2009-10-31 C. Bennemann , J. Baschnagel , W. Paul , K. Binder

We use momentum-dependent electron energy-loss spectroscopy in transmission to study collective charge excitations in the layer metal Sr$_2$RuO$_4$. This metal has a transition from a perfect Fermi liquid below $T\approx30\,$K into a…

Strongly Correlated Electrons · Physics 2025-07-23 J. Schultz , A. Lubk , F. Jerzembeck , N. Kikugawa , M. Knupfer , D. Wolf , B. Büchner , J. Fink

During embryonic development, regeneration and homeostasis, cells have to physically integrate into their target tissues, where they ultimately execute their function. Despite a significant body of research on how mechanical forces instruct…

Despite much current interest in active matter, little is known about osmosis in active systems. Using molecular dynamics simulations, we investigate how active solutes perturb osmotic steady states. We find that solute activity increases…

Soft Condensed Matter · Physics 2015-06-18 Thomas W. Lion , Rosalind J. Allen

We investigate the procedures of loading and detecting three-dimensional fermionic quantum gases in a one-dimensional optical superlattice potential subjected to a trapping potential. Additionally, we consider the relaxation dynamics after…

Quantum Gases · Physics 2015-06-10 Ameneh Sheikhan , Corinna Kollath

Plasmodium of Physarum polycephalum is a large single cell visible by unaided eye. It shows sophisticated behavioural traits in foraging for nutrients and developing an optimal transport network of protoplasmic tubes spanning sources of…

Emerging Technologies · Computer Science 2013-05-03 Andrew Adamatzky , Genaro J. Martinez

Block-copolymer electrolytes with lamellar microstructure show promising results regarding the ion transport in experiments. Motivated by these observations we study block-copolymers consisting of a polystyrene (PS) block and a…

Soft Condensed Matter · Physics 2025-12-23 Len Kimms , Diddo Diddens , Andreas Heuer

Plasma treatment of polymer films results in their electrical charging, which in turn gives rise to an increase in their surface energy. The process results in pronounced hydrophilization of the polymer surfaces. A phenomenological theory…

We introduce a multi-species lattice gas model for motor protein driven collective cargo transport on cellular filaments. We use this model to describe and analyze the collective motion of interacting vesicle cargoes being carried by…

Statistical Mechanics · Physics 2010-09-10 Sudipto Muhuri , Ignacio Pagonabarraga

Multistationarity, underlies biochemical switching and cellular decision-making. We study how multistationarity in the sequential n-site phosphorylation-dephosphorylation cycle is affected when only some species are open, meaning allowed to…

Dynamical Systems · Mathematics 2025-11-14 Praneet Nandan , Beatriz Pascual-Escudero , Diego Rojas La Luz

Building on the results of our computer simulation (ArXiv cond-mat/0503573)we develop a theoretical description of the motion of a bead, embedded in a network of semiflexible polymers, and responding to an applied force. The theory reveals…

Soft Condensed Matter · Physics 2013-05-29 N. Ter-Oganessian , D. A. Pink , A. Boulbitch

We develop a correlation-corrected transport theory in order to predict ionic and polymer transport properties of membrane nanopores in physical conditions where mean-field electrostatics breaks down. The experimentally observed low KCl…

Soft Condensed Matter · Physics 2014-11-06 Sahin Buyukdagli , Tapio Ala-Nissila

$^{18}$F-Fluoromisonidazole ($^{18}$F-FMISO) is a highly promising positron emission tomography radiopharmaceutical for identifying hypoxic regions in solid tumors. This research employs spatiotemporal multi-scale mathematical modeling to…

Biological Physics · Physics 2024-05-08 Mohammad Amin Abazari , M. Soltani , Faezeh Eydi , Arman Rahmim , Farshad Moradi Kashkooli