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We propose a novel discrete model of central pattern generators (CPG), neuronal ensembles generating rhythmic activity. The model emphasizes the role of nonsynaptic interactions and the diversity of electrical properties in nervous systems.…

Neural and Evolutionary Computing · Computer Science 2017-05-10 Nikolay Bazenkov , Varvara Dyakonova , Oleg Kuznetsov , Dmitri Sakharov , Dmitry Vorontsov , Liudmila Zhilyakova

We study with numerical simulation the possible limit behaviors of synchronous discrete-time deterministic recurrent neural networks composed of N binary neurons as a function of a network's level of dilution and asymmetry. The network…

Disordered Systems and Neural Networks · Physics 2018-05-11 Viola Folli , Giorgio Gosti , Marco Leonetti , Giancarlo Ruocco

Cognitive function is driven by dynamic interactions between large-scale neural circuits or networks, enabling behavior. Fundamental principles constraining these dynamic network processes have remained elusive. Here we use network control…

Neurons and Cognition · Quantitative Biology 2015-10-28 Shi Gu , Fabio Pasqualetti , Matthew Cieslak , Scott T. Grafton , Danielle S. Bassett

The evolution of convolutional neural networks (CNNs) can be largely attributed to the design of its architecture, i.e., the network wiring pattern. Neural architecture search (NAS) advances this by automating the search for the optimal…

Neural and Evolutionary Computing · Computer Science 2023-04-21 Lin Zhao , Haixing Dai , Zihao Wu , Dajiang Zhu , Tianming Liu

Computational approaches which emulate in-vivo nervous system are needed to investigate mechanisms of the brain to orchestrate behavior. Such approaches must integrate a series of biophysical models encompassing the nervous system, muscles,…

Quantitative Methods · Quantitative Biology 2025-06-05 Jimin Kim , Jeremy T. Florman , Julia A. Santos , Mark J. Alkema , Eli Shlizerman

Neural connectivity at the cellular and mesoscopic level appears very specific and is presumed to arise from highly specific developmental mechanisms. However, there are general shared features of connectivity in systems as different as the…

Neurons and Cognition · Quantitative Biology 2009-12-06 Marcus Kaiser , Claus C. Hilgetag , Arjen van Ooyen

Different network models have been suggested for the topology underlying complex interactions in natural systems. These models are aimed at replicating specific statistical features encountered in real-world networks. However, it is rarely…

Physics and Society · Physics 2012-06-11 Stefano Cardanobile , Volker Pernice , Moritz Deger , Stefan Rotter

The basic units in our brain are neurons and each neuron has more than 1000 synapse connections. Synapse is the basic structure for information transfer in an ever-changing manner, and short-term plasticity allows synapses to perform…

Materials Science · Physics 2014-03-05 Li Qiang Zhu , Chang Jin Wan , Li Qiang Guo , Yi Shi , Qing Wan

Inspired by animal navigation strategies, we introduce a novel computational model to navigate and map a space rooted in biologically inspired principles. Animals exhibit extraordinary navigation prowess, harnessing memory, imagination, and…

Robotics · Computer Science 2025-01-07 Daria de Tinguy , Tim Verbelen , Bart Dhoedt

Synaptic plasticity typically produces heavy-tailed distributions of synaptic strengths, consisting of a few strong connections among many weaker ones. Meanwhile, structural plasticity relies on distinct signaling cascades to reshape…

Neurons and Cognition · Quantitative Biology 2026-01-06 Jia Li , Cees van Leeuwen , Roman Bauer , Ilias Rentzeperis

The structure of biological neural circuits-modular, hierarchical, and sparsely interconnected-reflects an efficient trade-off between wiring cost, functional specialization, and robustness. These principles offer valuable insights for…

Machine Learning · Computer Science 2025-09-23 Orestis Konstantaropoulos , Stelios Manolis Smirnakis , Maria Papadopouli

Capturing how the Caenorhabditis elegans connectome structure gives rise to its neuron functionality remains unclear. It is through fiber symmetries found in its neuronal connectivity that synchronization of a group of neurons can be…

Neurons and Cognition · Quantitative Biology 2024-05-07 Bryant Avila , Pedro Augusto , Manuel Zimmer , Matteo Serafino , Hernán A. Makse

Caenorhabditis elegans (C. elegans) is an excellent model organism because of its short lifespan and high degree of homology with human genes, and it has been widely used in a variety of human health and disease models. However, the…

Computer Vision and Pattern Recognition · Computer Science 2024-11-27 Mengqian Dinga , Jun Liua , Yang Luo , Jinshan Tang

We consider a fully-connected network of leaky integrate-and-fire neurons with spike-timing-dependent plasticity. The plasticity is controlled by a parameter representing the expected weight of a synapse between neurons that are firing…

Neurons and Cognition · Quantitative Biology 2011-09-23 Chun-Chung Chen , David Jasnow

Cognition is supported by neurophysiological processes that occur both in local anatomical neighborhoods and in distributed large-scale circuits. Recent evidence from network control theory suggests that white matter pathways linking…

Neurons and Cognition · Quantitative Biology 2016-06-30 John D. Medaglia , Shi Gu , Fabio Pasqualetti , Rebecca L. Ashare , Caryn Lerman , Joseph Kable , Danielle S. Bassett

Neural communication operates on both fast synaptic transmission and slower, diffusive extrasynaptic signaling, yet how these two modes jointly organize brain function remains unclear. Here, using the complete synaptic and neuropeptidergic…

Neurons and Cognition · Quantitative Biology 2026-04-03 Giridhar Sunil , Habib Benali , Elkaïoum M. Moutuou

Transport of dense core vesicles (DCVs) in neurons is crucial for distributing molecules like neuropeptides and growth factors. We studied the experimental trajectories of dynein-driven directed movement of DCVs in the ALA neuron C. elegans…

Subcellular Processes · Quantitative Biology 2025-03-04 Anna Gavrilova , Nickolay Korabel , Victoria J. Allan , Sergei Fedotov

We present an automated method to track and identify neurons in C. elegans, called "fast Deep Learning Correspondence" or fDLC, based on the transformer network architecture. The model is trained once on empirically derived synthetic data…

Quantitative Methods · Quantitative Biology 2021-07-16 Xinwei Yu , Matthew S. Creamer , Francesco Randi , Anuj K. Sharma , Scott W. Linderman , Andrew M. Leifer

Understanding the mechanisms of neural communication in large-scale brain networks remains a major goal in neuroscience. We investigated whether navigation is a parsimonious routing model for connectomics. Navigating a network involves…

Neurons and Cognition · Quantitative Biology 2018-06-05 Caio Seguin , Martijn P. van den Heuvel , Andrew Zalesky

Spiking Neural Networks (SNNs) are more biologically plausible and computationally efficient. Therefore, SNNs have the natural advantage of drawing the sparse structural plasticity of brain development to alleviate the energy problems of…

Neural and Evolutionary Computing · Computer Science 2023-02-06 Bing Han , Feifei Zhao , Yi Zeng , Wenxuan Pan
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