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Dual graphs have been applied to model RNA secondary structures with pseudoknots, or intertwined base pairs. In previous works, a linear-time algorithm was introduced to partition dual graphs into maximally connected components called…

Biomolecules · Quantitative Biology 2021-09-09 Louis Petingi

We study invariant Seifert surfaces for strongly invertible knots, and prove that the gap between the equivariant genus (the minimum of the genera of invariant Seifert surfaces) of a strongly invertible knot and the (usual) genus of the…

Geometric Topology · Mathematics 2022-08-30 Mikami Hirasawa , Ryota Hiura , Makoto Sakuma

A symmetric quandle is a quandle with a good involution. For a knot in \$R^3\$, a knotted surface in \$R^4\$ or an \$n\$-manifold knot in \$R^{n+2}\$, the knot symmetric quandle is defined. We introduce the notion of a symmetric quandle…

Geometric Topology · Mathematics 2016-01-06 Seiichi Kamada

Geometric interpretations of some virtual knot invariants are given in terms of invariants of links in $\mathbb{S}^3$. Alexander polynomials of almost classical knots are shown to be specializations of the multi-variable Alexander…

Geometric Topology · Mathematics 2018-07-27 Micah Chrisman , Robert G. Todd

Link homotopy has been an active area of research for knot theorists since its introduction by Milnor in the 1950s. We introduce a new equivalence relation on spatial graphs called component homotopy, which reduces to link homotopy in the…

Geometric Topology · Mathematics 2009-09-29 Thomas Fleming

We have a knot quandle and a fundamental class as invariants for a surface-knot. These invariants can be defined for a classical knot in a similar way, and it is known that the pair of them is a complete invariant for classical knots. In…

Geometric Topology · Mathematics 2007-05-23 Kokoro Tanaka

To a singular knot K with n double points, one can associate a chord diagram with n chords. A chord diagram can also be understood as a 4-regular graph endowed with an oriented Euler circuit. L. Traldi introduced a polynomial invariant for…

Combinatorics · Mathematics 2025-09-23 Alexander Dunaykin , Vyacheslav Zhukov

In the present paper, we define an invariant of free links valued in a free product of some copies of $\mathbb{Z}_{2}$. In \cite{Ma2} the second named author constructed a connection between classical braid group and group presentation…

Geometric Topology · Mathematics 2015-08-05 S. Kim , V. O. Manturov

We give a fresh introduction to the Khovanov Homology theory for knots and links, with special emphasis on its extension to tangles, cobordisms and 2-knots. By staying within a world of topological pictures a little longer than in other…

Geometric Topology · Mathematics 2014-11-11 Dror Bar-Natan

The notion of holonomy $R$-matrices is introduced. It is shown how to define invariants of tangles with flat connections in a principle $G$-bundle of the complement of a tangle using holonomy $R$-matrices.

Algebraic Topology · Mathematics 2007-05-23 R. Kashaev , N. Reshetikhin

We generalize the concept of token graphs to obtain supertoken graphs. In the latter case, there can be more than one token in a vertex. We formally define supertoken graphs and establish their basic properties. Moreover, we provide some…

Combinatorics · Mathematics 2026-04-08 Mónica A. Reyes , Cristina Dalfó , Miquel Àngel Fiol

Concordance invariants of knots are derived from the instanton homology groups with local coefficients, as introduced in earlier work of the authors. These concordance invariants include a 1-parameter family of homomorphisms $f_{r}$, from…

Geometric Topology · Mathematics 2021-02-03 Peter B. Kronheimer , Tomasz S. Mrowka

A knot invariant is called skein if it is determined by a finite number of skein relations. In the paper we discuss some basic properties of skein invariants and mention some known examples of skein invariants.

Geometric Topology · Mathematics 2024-12-30 Igor Nikonov

Milnor's $\bar{\mu}$-invariants of links in the $3$-sphere $S^3$ vanish on any link concordant to a boundary link. In particular, they are trivial on any knot in $S^3$. Here we consider knots in thickened surfaces $\Sigma \times [0,1]$,…

Geometric Topology · Mathematics 2022-11-02 Micah Chrisman

The 2-twist spun trefoil is an example of a sphere that is knotted in 4-dimensional space. Here this example is shown to be distinct from the same sphere with the reversed orientation. To demonstrate this fact a state-sum invariant for…

Geometric Topology · Mathematics 2007-05-23 J. Scott Carter , Daniel Jelsovsky , Seiichi Kamada , Laurel Langford , Masahico Saito

We construct new knot polynomials. Let $V$ be the standard solid torus in 3-space and let $pr$ be its standard projection onto an annulus. Let $M$ be the space of all smooth oriented knots in $V$ such that the restriction of $pr$ is an…

Geometric Topology · Mathematics 2007-05-23 Thomas Fiedler

In this paper we study the theory of {\it pseudo knots}, which are knots with some missing crossing information, and we introduce and study the theory of {\it pseudo tied links} and the theory of {\it pseudo knotoids}. In particular, we…

Geometric Topology · Mathematics 2020-11-30 Ioannis Diamantis

We define relative versions of the classical invariants of Legendrian and transverse knots in contact 3-manifolds for knots that are homologous to a fixed reference knot. We show these invariants are well-defined and give some basic…

Symplectic Geometry · Mathematics 2009-09-25 Georgi D. Gospodinov

We inductively define layers of colorings of knot and knotted surface diagrams using ternary quasigroups. Homological invariants from such systems of colorings use shorter differentials and of higher degree than the standard homology…

Geometric Topology · Mathematics 2019-03-27 Maciej Niebrzydowski

We modify the definition of spherical knotoids to include a framing, in analogy to framed knots, and define a further modification that includes a secondary 'coframing' to obtain 'biframed' knotoids. We exhibit topological spaces whose…

Geometric Topology · Mathematics 2022-06-22 Wout Moltmaker