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We investigate a set of design principles that link specific features of interparticle interactions to predictable structural and dynamic outcomes in two-dimensional self-assembly, a framework relevant to soft matter and biological…

Soft Condensed Matter · Physics 2026-01-06 Cecilia Bores , Antonio Diaz-Pozuelo , Enrique Lomba

We study the self-assembly behaviour of patchy particles with `protein-like' interactions that can be considered as a minimal model for the assembly of viral capsids and other shell-like protein complexes. We thoroughly explore the…

Soft Condensed Matter · Physics 2010-01-21 Alex W. Wilber , Jonathan P. K. Doye , Ard A. Louis , Anna C. F. Lewis

In a companion paper, equations for partially molten media were derived using two-scale homogenization theory. One advantage of homogenization is that material properties, such as permeability and viscosity, readily emerge. A caveat is that…

Geophysics · Physics 2015-05-13 Gideon Simpson , Marc Spiegelman , Michael I. Weinstein

Collective guidance of out-of-equilibrium systems without using external fields is a challenge of paramount importance in active matter, ranging from bacterial colonies to swarms of self-propelled particles. Designing strategies to guide…

Nature is remarkably adept at using interfaces to build structures, encapsulate reagents, and regulate biological processes. Inspired by Nature, we describe flexible polymer-based ribbons, termed "mesoscale polymers" (MSPs), to modulate…

Soft Condensed Matter · Physics 2021-08-23 Dylan M. Barber , Zhefei Yang , Lucas Prevost , Olivia du Roure , Anke Lindner , Todd Emrick , Alfred J. Crosby

The precise arrangement of microscopic objects is critical to the development of functional materials and ornately patterned surfaces. Here, we present an acoustics-based method for the rapid arrangement of microscopic particles into…

Soft Condensed Matter · Physics 2016-02-10 Crystal E. Owens , C. Wyatt Shields , Daniela F. Cruz , Patrick Charbonneau , Gabriel P. Lopez

This note presents a simulation method for investigating the relationship between porosity and particle size distribution in porous media characterization. The method simulates particle packing based on particle size distributions,…

Soft Condensed Matter · Physics 2024-09-25 Yuhe Wang

The paper presents two-scale numerical algorithms for stress-strain analysis of porous media featured by self-contact at pore level. The porosity is constituted as a periodic lattice generated by a representative cell consisting of elastic…

Analysis of PDEs · Mathematics 2023-01-18 Eduard Rohan , Jan Heczko

In this paper we study the mechanical properties and pore structure in a three-dimensional molecular dynamics model of porous glass under athermal quasistatic shear. The vitreous samples are prepared by rapid thermal quench from a high…

Soft Condensed Matter · Physics 2021-06-08 Sucharita Niyogi , Bhaskar Sen Gupta

We propose a general framework for solving inverse self-assembly problems, i.e. designing interactions between elementary units such that they assemble spontaneously into a predetermined structure. Our approach uses patchy particles as…

Soft Condensed Matter · Physics 2022-07-13 John Russo , Flavio Romano , Lukas Kroc , Francesco Sciortino , Lorenzo Rovigatti , Petr Sulc

Spontaneous imbibition has been receiving much attention due to its significance in many subsurface and industrial applications. Unveiling pore-scale wetting dynamics, and particularly its upscaling to the Darcy scale are still unresolved.…

Soft Condensed Matter · Physics 2022-02-14 Chao-Zhong Qin , Xin Wang , Mahmoud Hefny , Jianlin Zhao , Bo Guo

We introduce a minimal model of solid-forming anisotropic molecules that displays, in thermal equilibrium, surface orientational order without bulk orientational order. The model reproduces the nonequilibrium behavior of recent experiments…

Statistical Mechanics · Physics 2021-10-13 Stephen Whitelam , Peter Harrowell

The possibility to align and organize faceted particles in the bulk offers intriguing possibilities for the design and discovery of materials and architectures exhibiting novel functional properties. The growth of ice crystals can be used…

Materials Science · Physics 2015-07-01 Florian Bouville , Eric Maire , Sylvain Deville

We consider a lattice model for amphiphiles in a solvent with molecules chemically similar to one part of the amphiphilic molecule. The dependence of the interaction potential on orientation of the amphiphilic molecules is taken into…

Soft Condensed Matter · Physics 2014-11-14 Jakub Pękalski , Paweł Rogowski , Alina Ciach

Significant progress has been made for assessing the influence of porosity on the performance metrics for cast components through various modeling techniques. However, a computationally efficient framework to account for porosity with…

Computational Engineering, Finance, and Science · Computer Science 2022-04-05 Shiguang Deng , Carl Soderhjelm , Diran Apelian , Krishnan Suresh

The homogeneous partly pinned fluid systems are simple models of a fluid confined in a disordered porous matrix obtained by arresting randomly chosen particles in a one-component bulk fluid or one of the two components of a binary mixture.…

Soft Condensed Matter · Physics 2010-12-07 Vincent Krakoviack

In the self-assembly process which drives the formation of cellular membranes, micelles, and capsids, a collection of separated subunits spontaneously binds together to form functional and more ordered structures. In this work, we study the…

Biological Physics · Physics 2021-05-04 Mobolaji Williams

Amorphous materials of homogeneous structures usually suffer from nonuniform deformation under shear, which can develop into shear localization and eventually destructive shear band. One approach to tackle this issue is to introduce an…

Materials Science · Physics 2019-02-01 Guo-Jie J. Gao , Yun-Jiang Wang , Shigenobu Ogata

Self-assembly of matter in solution generally relies on attractive interactions that overcome entropy and drive the formation of higher-order molecular and particulate structures. Such interactions play key roles in a variety of contexts,…

Soft Condensed Matter · Physics 2025-04-08 Sida Wang , Rowan Walker-Gibbons , Bethany Watkins , Binghui Lin , Madhavi Krishnan

Capillarity-driven self-assembly at fluidic interfaces offers a scalable route to large, reconfigurable materials. Microscale particles with high horizontal-to-vertical aspect ratios become attractive building blocks for shape-directed…

Soft Condensed Matter · Physics 2026-05-27 Sungwan Park , Justin Jeongwoo Choi , Albert Tianxiang Liu