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Examining individual components of cellular systems has been successful in uncovering molecular reactions and interactions. However, the challenge lies in integrating these components into a comprehensive system-scale map. This difficulty…

Other Quantitative Biology · Quantitative Biology 2024-07-03 Nima Dehghani

A good process model is expected not only to reflect the behavior of the process, but also to be as easy to read and understand as possible. Because preferences vary across different applications, numerous measures provide ways to reflect…

Formal Languages and Automata Theory · Computer Science 2024-08-23 Patrizia Schalk , Adam Burke , Robert Lorenz

The spread of misinformation, propaganda, and flawed argumentation has been amplified in the Internet era. Given the volume of data and the subtlety of identifying violations of argumentation norms, supporting information analytics tasks,…

Complexity is a measure of information content. Crystalline materials are not complex systems because their structures can be represented tersely using the language of crystallography. Disordered materials are also structurally simple if…

Disordered Systems and Neural Networks · Physics 2025-09-12 Andrew L. Goodwin

Biological phenomena differ significantly from physical phenomena. At the heart of this distinction is the fact that biological entities have computational abilities and thus they are inherently difficult to predict. This is the reason why…

Molecular Networks · Quantitative Biology 2009-09-29 Pau Fernandez , Ricard V. Sole

Ontologies are a popular way of representing domain knowledge, in particular, knowledge in domains related to life sciences. (Semi-)automating the process of building an ontology has attracted researchers from different communities into a…

Artificial Intelligence · Computer Science 2021-03-26 Ana Ozaki

Logical specifications play a key role in the formal analysis of behavioural models. Automating the derivation of such specifications is particularly valuable in complex systems, where manual construction is time-consuming and error-prone.…

Software Engineering · Computer Science 2025-06-11 Radoslaw Klimek , Julia Witek

In this paper, we analyze the complexity of functional programs written in the interaction-net computation model, an asynchronous, parallel and confluent model that generalizes linear-logic proof nets. Employing user-defined sized and…

Programming Languages · Computer Science 2015-11-06 Stéphane Gimenez , Georg Moser

In Monoidal Computer I, we introduced a categorical model of computation where the formal reasoning about computability was supported by the simple and popular diagrammatic language of string diagrams. In the present paper, we refine and…

Logic in Computer Science · Computer Science 2014-02-25 Dusko Pavlovic

A new syntactic characterization of problems complete via Turing reductions is presented. General canonical forms are developed in order to define such problems. One of these forms allows us to define complete problems on ordered…

Computational Complexity · Computer Science 2014-11-25 Vladimir Naidenko

Matching logic is a logical framework for specifying and reasoning about programs using pattern matching semantics. A pattern is made up of a number of structural components and constraints. Structural components are syntactically matched,…

Logic in Computer Science · Computer Science 2024-11-01 Ádám Kurucz , Péter Bereczky , Dániel Horpácsi

Faraday complexity describes whether a spectropolarimetric observation has simple or complex magnetic structure. Quickly determining the Faraday complexity of a spectropolarimetric observation is important for processing large, polarised…

Instrumentation and Methods for Astrophysics · Physics 2021-07-01 M. J. Alger , J. D. Livingston , N. M. McClure-Griffiths , J. L. Nabaglo , O. I. Wong , C. S. Ong

We define a measure for the complexity of Boolean functions related to their implementation in neural networks, and in particular close related to the generalization ability that could be obtained through the learning process. The measure…

Disordered Systems and Neural Networks · Physics 2007-05-23 Leonardo Franco

We study the framework of abductive logic programming extended with integrity constraints. For this framework, we introduce a new measure of the simplicity of an explanation based on its degree of \emph{arbitrariness}: the more arbitrary…

Logic in Computer Science · Computer Science 2020-02-19 Luciano Caroprese , Irina Trubitsyna , Miroslaw Truszczynski , Ester Zumpano

We describe a representation and a set of inference methods that combine logic programming techniques with probabilistic network representations for uncertainty (influence diagrams). The techniques emphasize the dynamic construction and…

Artificial Intelligence · Computer Science 2013-04-11 John S. Breese , Edison Tse

The generation of comprehensible explanations is an essential feature of modern artificial intelligence systems. In this work, we consider probabilistic logic programming, an extension of logic programming which can be useful to model…

Artificial Intelligence · Computer Science 2023-08-17 Germán Vidal

Complex systems are often modeled as Boolean networks in attempts to capture their logical structure and reveal its dynamical consequences. Approximating the dynamics of continuous variables by discrete values and Boolean logic gates may,…

Molecular Networks · Quantitative Biology 2013-05-29 Johannes Norrell , Joshua E. S. Socolar

Scientists often use observational time series data to study complex natural processes, but regression analyses often assume simplistic dynamics. Recent advances in deep learning have yielded startling improvements to the performance of…

Machine Learning · Computer Science 2023-04-21 Cory Shain , William Schuler

Logic reasoning is a significant ability of human intelligence and also an important task in artificial intelligence. The existing logic reasoning methods, quite often, need to design some reasoning patterns beforehand. This has led to an…

Computer Vision and Pattern Recognition · Computer Science 2021-06-30 Qian Guo , Yuhua Qian , Xinyan Liang , Yanhong She , Deyu Li , Jiye Liang

Large Language Models (LLMs) increasingly exhibit strong reasoning abilities, often attributed to their capacity to generate chain-of-thought-style intermediate reasoning. Recent work suggests that exposure to code can further enhance these…

Machine Learning · Computer Science 2026-01-30 Lukas Twist , Shu Yang , Hanqi Yan , Jingzhi Gong , Di Wang , Helen Yannakoudakis , Jie M. Zhang