Related papers: Some Results on Superpatterns for Preferential Arr…
The NP-complete Permutation Pattern Matching problem asks whether a permutation P (the pattern) can be matched into a permutation T (the text). A matching is an order-preserving embedding of P into T. In the Generalized Permutation Pattern…
Given \(k\) strings each of length at most $n$, computing the shortest common supersequence of them is a well-known NP-hard problem (when \(k\) is unbounded). On the other hand, when \(k=2\), such a shortest common supersequence can be…
We investigate the variance of the length of the longest common subsequences of two independent random words of size $n$, where the letters of one word are i.i.d. uniformly drawn from $\{\alpha_1, \alpha_2, \cdots, \alpha_m\}$, while the…
In this paper, we consider pattern avoidance in a subset of words on $\{1,1,2,2,\dots,n,n\}$ called reverse double lists. In particular a reverse double list is a word formed by concatenating a permutation with its reversal. We enumerate…
We consider the length L of the longest common subsequence of two randomly uniformly and independently chosen n character words over a k-ary alphabet. Subadditivity arguments yield that the expected value of L, when normalized by n,…
Let $S_{T}(k)$ denote the set of distinct substrings of length $k$ in a string $T$, then the $k$-th substring complexity is defined by its cardinality $|S_{T}(k)|$. Recently, $\delta = \max \{ |S_{T}(k)| / k : k \ge 1 \}$ is shown to be a…
In a totally ordered set the notion of sorting a finite sequence is defined through a suitable permutation of the sequence's indices. In this paper we prove a simple formula that explicitly describes how the elements of a sequence are…
Much work on argument systems has focussed on preferred extensions which define the maximal collectively defensible subsets. Identification and enumeration of these subsets is (under the usual assumptions) computationally demanding. We…
Let $\widetilde{\alpha}$ be a length-$L$ cyclic sequence of characters from a size-$K$ alphabet $\mathcal{A}$ such that the number of occurrences of any length-$m$ string on $\mathcal{A}$ as a substring of $\widetilde{\alpha}$ is $\lfloor L…
In this paper, we study a series of algorithmic problems related to the subsequences occurring in the strings of a given language, under the assumption that this language is succinctly represented by a grammar generating it, or an automaton…
It was recently shown that arbitrary first-order models canonically extend to models (of the same language) consisting of ultrafilters. The main precursor of this construction was the extension of semigroups to semigroups of ultrafilters, a…
We present a first-order theory of sequences with integer elements, Presburger arithmetic, and regular constraints, which can model significant properties of data structures such as arrays and lists. We give a decision procedure for the…
Let $G=(\mathbb Z/n\mathbb Z) \oplus (\mathbb Z/n\mathbb Z)$. Let $\mathsf {s}_{\leq k}(G)$ be the smallest integer $\ell$ such that every sequence of $\ell$ terms from $G$, with repetition allowed, has a nonempty zero-sum subsequence with…
We consider the problem of querying a string (or, a database) of length $N$ bits to determine all the locations where a substring (query) of length $M$ appears either exactly or is within a Hamming distance of $K$ from the query. We assume…
We say a string has a cadence if a certain character is repeated at regular intervals, possibly with intervening occurrences of that character. We call the cadence anchored if the first interval must be the same length as the others. We…
We introduce a novel definition of approximate palindromes in strings, and provide an algorithm to find all maximal approximate palindromes in a string with up to $k$ errors. Our definition is based on the usual edit operations of…
The standard models of sequence evolution on a tree determine probabilities for every character or site pattern. A flattening is an arrangement of these probabilities into a matrix, with rows corresponding to all possible site patterns for…
An old open problem in graph drawing asks for the size of a universal point set, a set of points that can be used as vertices for straight-line drawings of all n-vertex planar graphs. We connect this problem to the theory of permutation…
Bitstrings can be permuted via permutations and compared via the lexicographic order. In this paper we study the complexity of finding a minimum of a bitstring via given permutations. As a global optima is known to be NP-complete, we study…
Recent sequential pattern mining methods have used the minimum description length (MDL) principle to define an encoding scheme which describes an algorithm for mining the most compressing patterns in a database. We present a novel…