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The human brain forms functional networks on all spatial scales. Modern fMRI scanners allow to resolve functional brain data in high resolutions, allowing to study large-scale networks that relate to cognitive processes. The analysis of…

Neurons and Cognition · Quantitative Biology 2019-05-14 Melanie Weber , Johannes Stelzer , Emil Saucan , Alexander Naitsat , Gabriele Lohmann , Jürgen Jost

Understanding the dynamic reorganization of brain networks is critical for predicting cognitive decline, neurological progression, and individual variability in clinical outcomes. This work proposes a multimodal graph neural network…

Machine Learning · Computer Science 2026-02-11 Preksha Girish , Rachana Mysore , Kiran K. N. , Hiranmayee R. , Shipra Prashanth , Shrey Kumar

The human brain is a complex, dynamic network, which is commonly studied using functional magnetic resonance imaging (fMRI) and modeled as network of Regions of interest (ROIs) for understanding various brain functions. Recent studies…

Quantitative Methods · Quantitative Biology 2024-06-26 Yifan Yang , Yutong Mao , Xufu Liu , Xiao Liu

Deep generative models have shown success in generating 3D shapes with different representations. In this work, we propose Neural Volumetric Mesh Generator(NVMG) which can generate novel and high-quality volumetric meshes. Unlike the…

Computer Vision and Pattern Recognition · Computer Science 2022-10-10 Yan Zheng , Lemeng Wu , Xingchao Liu , Zhen Chen , Qiang Liu , Qixing Huang

Graphs are a natural representation of brain activity derived from functional magnetic imaging (fMRI) data. It is well known that clusters of anatomical brain regions, known as functional connectivity networks (FCNs), encode temporal…

Machine Learning · Computer Science 2023-01-30 Alexander Campbell , Simeon Spasov , Nicola Toschi , Pietro Lio

Mental and cognitive representations are believed to reside on low-dimensional, non-linear manifolds embedded within high-dimensional brain activity. Uncovering these manifolds is key to understanding individual differences in brain…

Machine Learning · Computer Science 2025-05-02 Eloy Geenjaar , Vince Calhoun

Visual reconstruction algorithms are an interpretive tool that map brain activity to pixels. Past reconstruction algorithms employed brute-force search through a massive library to select candidate images that, when passed through an…

Neurons and Cognition · Quantitative Biology 2023-05-03 Reese Kneeland , Jordyn Ojeda , Ghislain St-Yves , Thomas Naselaris

We introduce a methodology for analyzing neural networks through the lens of layer-wise Hessian matrices. The local Hessian of each functional block (layer) is defined as the matrix of second derivatives of a scalar function with respect to…

Machine Learning · Computer Science 2025-11-11 Maxim Bolshim , Alexander Kugaevskikh

Understanding functional representations within higher visual cortex is a fundamental question in computational neuroscience. While artificial neural networks pretrained on large-scale datasets exhibit striking representational alignment…

Image-to-fMRI encoding is important for both neuroscience research and practical applications. However, such "Brain-Encoders" have been typically trained per-subject and per fMRI-dataset, thus restricted to very limited training data. In…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Roman Beliy , Navve Wasserman , Amit Zalcher , Michal Irani

On basis of functional magnetic resonance imaging (fMRI), researchers are devoted to designing visual encoding models to predict the neuron activity of human in response to presented image stimuli and analyze inner mechanism of human visual…

Computer Vision and Pattern Recognition · Computer Science 2020-03-27 Kai Qiao , Chi Zhang , Jian Chen , Linyuan Wang , Li Tong , Bin Yan

Network analysis is rapidly becoming a standard tool for studying functional magnetic resonance imaging (fMRI) data. In this framework, different brain areas are mapped to the nodes of a network, whose links depict functional dependencies…

Neurons and Cognition · Quantitative Biology 2017-05-30 Rainer Kujala , Enrico Glerean , Raj Kumar Pan , Iiro P. Jääskeläinen , Mikko Sams , Jari Saramäki

Quantitative modeling of human brain activity based on language representations has been actively studied in systems neuroscience. However, previous studies examined word-level representation, and little is known about whether we could…

Computer Vision and Pattern Recognition · Computer Science 2018-02-08 Eri Matsuo , Ichiro Kobayashi , Shinji Nishimoto , Satoshi Nishida , Hideki Asoh

The main goal of this study is to extract a set of brain networks in multiple time-resolutions to analyze the connectivity patterns among the anatomic regions for a given cognitive task. We suggest a deep architecture which learns the…

Machine Learning · Statistics 2017-08-16 Arash Rahnama , Abdullah Alchihabi , Vijay Gupta , Panos Antsaklis , Fatos T. Yarman Vural

AI-based neural decoding reconstructs visual perception by leveraging generative models to map brain activity, measured through functional MRI (fMRI), into latent hierarchical representations. Traditionally, ridge linear models transform…

Image and Video Processing · Electrical Eng. & Systems 2025-09-04 Lorenzo Veronese , Andrea Moglia , Luca Mainardi , Pietro Cerveri

Voxel hierarchy on dynamic brain graphs is produced by k core percolation on functional dynamic amplitude correlation of resting-state fMRI. Directed graphs and their afferent/efferent capacities are produced by Markov modeling of the…

Neurons and Cognition · Quantitative Biology 2024-06-13 Dong Soo Lee , Hyun Joo Kim , Youngmin Huh , Yeon Koo Kang , Wonseok Whi , Hyekyoung Lee , Hyejin Kang

Understanding the neural mechanisms behind auditory and linguistic processing is key to advancing cognitive neuroscience. In this study, we use Magnetoencephalography (MEG) data to analyze brain responses to spoken language stimuli. We…

Neurons and Cognition · Quantitative Biology 2025-01-08 Matteo Ciferri , Matteo Ferrante , Nicola Toschi

fMRI is a non-invasive technique for investigating brain activity, offering high-resolution insights into neural processes. Understanding and decoding cognitive brain states from fMRI depends on how functional interactions are represented.…

Neurons and Cognition · Quantitative Biology 2026-02-23 Daniil Vlasenko , Vadim Ushakov , Alexey Zaikin , Denis Zakharov

The development of foundation models for functional magnetic resonance imaging (fMRI) time series holds significant promise for predicting phenotypes related to disease and cognition. Current models, however, are often trained using a…

Machine Learning · Computer Science 2026-03-03 Sam Gijsen , Marc-Andre Schulz , Kerstin Ritter

The formation of transient networks in response to external stimuli or as a reflection of internal cognitive processes is a hallmark of human brain function. However, its identification in fMRI data of the human brain is notoriously…

Neurons and Cognition · Quantitative Biology 2016-12-05 Gabriele Lohmann , Johannes Stelzer , Verena Zuber , Tilo Buschmann , Daniel Margulies , Andreas Bartels , Klaus Scheffler
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